Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00347 ATGATGGAAGGAGCAAGCAATGGAGGTATGTTATATCATGAGGTACAAGAATCAAAGCTTTGTGCTGTTCATTGCGTTAACACAGTTCTTCAAGGTCCATTTTTCTCTGAATTTGACTTAGCTGCACTCGCTTCCGATCTCGATTACAAAGAACGACAGATGATGATGCTTCCTGCTCACTCTTCTGCTTCCGGTGATTTATTCTCTCATAATGTTTCTCTTGATGGTGATTTCAGTATCCAGGTTTTACAAAAGGCTTTGGAAGTGTGGGACCTTCAAGTCATTCCCCTTGATTCTCCAGTTGCTGAGCCTGCCCAGATTGACCCTGAGCTGGAAAATGCCTTCATCTGTCATCTGCAGGATCATTGGTTTTGTATCCGCAAAGTGAACGGAGAGTGGTACAACTTTGACAGTCTCTATGCAGCTCCACAGCACCTTTCCAGGTTTTACCTTGCAGCTTACCTTGACTCTTTGAAAGGCTTTGGGTGGAGCATATTCCTGGTGAGAGGAAATTTTCCAAAAGAGTTTCCCATCTCTTCAGCTGAGTCTTCCAATGGTTTTGGGCAGTGGCTTTCACCTGAAGACGCCGAGAGAATTACCAAATCTTGCAACTCAGTACAGCAGGCTCCACAAGAAAGAGTTGTTGATAGGCAACAACATTCAAATCAGTTTCTTTCACGCGAGGAAGCTGAAATGTTTTCGGACATGGAAGATGAGGATCTAAAGGCGGCTATAGCAGCTAGTCTGATGGATTCGGCCCCAGCTGAAGCCAGTGCTCCTCAAAATAATGATAAGCAAAAGAGTATACATGTGGAAACCAGTGAAGCTAGTCTACCTCCCAATGATGAAAGAAACAAACATGTGGAAGCTACTGAAGCTGGTTCTTTTCAGAATGATAAAAACAACCAAGTCGAATCTTCTTTAGGTGGTGATAAATCTCAAAGTGAAAACAAGAATAAAGAGAAGAGTCTCTGA 975 0.4308 MMEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDYKERQMMMLPAHSSASGDLFSHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSRFYLAAYLDSLKGFGWSIFLVRGNFPKEFPISSAESSNGFGQWLSPEDAERITKSCNSVQQAPQERVVDRQQHSNQFLSREEAEMFSDMEDEDLKAAIAASLMDSAPAEASAPQNNDKQKSIHVETSEASLPPNDERNKHVEATEAGSFQNDKNNQVESSLGGDKSQSENKNKEKSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00347 324 MobiDBLite consensus disorder prediction 252 324 - -
Tsu06g00347 324 MobiDBLite consensus disorder prediction 291 313 - -
Tsu06g00347 324 Gene3D - 20 173 - -
Tsu06g00347 324 ProSiteProfiles Josephin domain profile. 8 183 IPR006155 GO:0004843|GO:0016579
Tsu06g00347 324 PRINTS Josephin signature 12 35 - -
Tsu06g00347 324 PRINTS Josephin signature 130 150 - -
Tsu06g00347 324 PRINTS Josephin signature 109 128 - -
Tsu06g00347 324 PRINTS Josephin signature 154 173 - -
Tsu06g00347 324 PANTHER ATAXIN-3-RELATED 2 319 IPR033865 GO:0004843|GO:0016579
Tsu06g00347 324 Gene3D - 191 267 - -
Tsu06g00347 324 Gene3D - 34 75 - -
Tsu06g00347 324 Pfam Josephin 16 169 IPR006155 GO:0004843|GO:0016579
Tsu06g00347 324 MobiDBLite consensus disorder prediction 255 275 - -
Tsu06g00347 324 PANTHER ATAXIN-3 2 319 - -
Tsu06g00347 324 SMART Josephin_2 15 171 IPR006155 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00347 Tsu-Chr6 2861052 2866079 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00347 K11863 - gmx:100808056 481.485