Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00296 atggTTAGAGCACTAGAACAAGAACAGGAAAATCATAAGTCCAAATTATTGCATTTTAAAGGAATGTTTGTGCATGCAGCGAGGCACTCAAAAAGTTTAAGCATTGAAAGTGCTAACACATTAAATCCTACAACAGAAGATGATAATGTTTCATCAAGAAGTCAAGGATCAAAGCCTCTACATCATGATCCTGAAAGGGCTCATCCTAACAAGTCAAGAACAATAAGGGAGGAGATTGTTGCCAAAGAAGCCAAAGAGAAACATGTGCAAGAAACCGAACAGATGAAGGAGAGATTTGCTAAACTACTATTGGGAGAGGATATGTCTGGTGGAGGGAAAGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTAACAAATCTTGCTGCTTCTGTTTTCGGTGAACAAAGGCGGTTAGAGCCAATGCCGCCGGAAAGGAAAGCCAGATGGAGAAAAGAAATCGATTGGCTTCTTTCGGTCACTGATTACGTTGTTGAAATGGTTCCTACACAACAGAAAGGCAAGGATGGTTCAAGCATGGAGATCATGACAACACGGCAACGAACCGATCTTCACATGAATATTCCTGCCTTGAGAAAACTTGATACAATGCTTATTGATTGTCTAGATGACTTCAAAGACCAAAAAGAATTCTATTATGTATCGAAAGATGCTGATGATAAAGACTCagcaaaaggaaaaaatgatGACAAGTGGTGGTTACCTACACCTAAAGTACCTGTAGATGGTTTATCTGATGCAGCAAGAAGATTTATACTGTATCAGAAAGATTGTGTGAATCAAGTACTTAAAGCAGCAATGGCTATAAATGCTCAAACTCTATCAGAAATGGAGATCCCTGAAAGCTATATTGAATCCCTACCTAAGAATGGAAGAGCAAGTCTAGGGGACTTGATTTACCGGAGCATTACCGATGATTTCTTTGATCCCGATCAGTTCCTAGCAACAGTTGACATGTCATCAGAACACAAGATTCTTGATCTCAAGAACAGAATCGAGGCATCAATAGTGATTTGGAAGAGGAAGATGAACCAAAAAGATAACAAATCAGCATGGGGTTCTGCTGTGAGTATTGAGAAAAGAGAACTCTTTGAAGACAGAGCAGAAACCATCTTAAATCTCTTGAAGCAAAGATTTCCAGGGCTTCCCCAATCTTCATTGGATATTAGCAAAATCCAATTCAACCGGGATGTAGGGCAAGCTGTTCTTGAAAGTTATTCAAGAATATTGGAAAGTTTGGCGTTTACGGTGCTATCAAGAATAGAAGATGTACTTCATGCAGATTGCCAAGCACAAAATCCATTACAAGGAAGAAAAAGCAGTTTGAGAAATCCAGTTCCAAAGCCAGACAAGTGTCCGACTCCTCCAAGAGAAGAAGTAGACAAGATCGGTGGAGAAACTCCTTGTTCGATGACACTATCAGATTTCATGGGTTGGACCAGTGAACAAGGTGAATCAGACCCTAATAAGAAGGATTCTTTGGCAGTTTCAGATGATTTGGACAAAGATATTGATAGCGGAAAGCTTCAAAAACTTCCACTAATATCGGCTGATAAGAAATTGTCCTACGTTGAAAACATAGGATTAATGAGAAGTCCGACATCACGCCATTGA 1635 0.392 MVRALEQEQENHKSKLLHFKGMFVHAARHSKSLSIESANTLNPTTEDDNVSSRSQGSKPLHHDPERAHPNKSRTIREEIVAKEAKEKHVQETEQMKERFAKLLLGEDMSGGGKGVSSALALSNALTNLAASVFGEQRRLEPMPPERKARWRKEIDWLLSVTDYVVEMVPTQQKGKDGSSMEIMTTRQRTDLHMNIPALRKLDTMLIDCLDDFKDQKEFYYVSKDADDKDSAKGKNDDKWWLPTPKVPVDGLSDAARRFILYQKDCVNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDLIYRSITDDFFDPDQFLATVDMSSEHKILDLKNRIEASIVIWKRKMNQKDNKSAWGSAVSIEKRELFEDRAETILNLLKQRFPGLPQSSLDISKIQFNRDVGQAVLESYSRILESLAFTVLSRIEDVLHADCQAQNPLQGRKSSLRNPVPKPDKCPTPPREEVDKIGGETPCSMTLSDFMGWTSEQGESDPNKKDSLAVSDDLDKDIDSGKLQKLPLISADKKLSYVENIGLMRSPTSRH 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00296 544 ProSiteProfiles PRONE domain profile. 82 445 IPR005512 GO:0005085
Tsu06g00296 544 MobiDBLite consensus disorder prediction 38 75 - -
Tsu06g00296 544 MobiDBLite consensus disorder prediction 492 509 - -
Tsu06g00296 544 Gene3D PRONE domain, subdomain 1 96 435 - -
Tsu06g00296 544 Gene3D PRONE domain, subdomain 2 285 401 - -
Tsu06g00296 544 MobiDBLite consensus disorder prediction 58 75 - -
Tsu06g00296 544 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 91 439 IPR005512 GO:0005085
Tsu06g00296 544 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 90 544 IPR038937 GO:0005085
Tsu06g00296 544 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 90 544 - -
Tsu06g00296 544 MobiDBLite consensus disorder prediction 38 57 - -
Tsu06g00296 544 MobiDBLite consensus disorder prediction 442 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00296 Tsu-Chr6 2429757 2433040 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00296 - - gmx:100777496 796.964