Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00295 atggGATCCATTTCCGTTCTCCTTGTAGTTCAAGTAATCCCATACTTAGAACAAGAACTCAACAAACGCTACAATCTTTTCCGCATATGGGATTTCCCACAAAAATCCCAACTTTTAACTCAACACGCCTCGTCAATCCGTGCGGTGGTCGGAAACGCTAACGCCGGCGCCGATGCTGAGTTAATTGATGCTCTACCGAAGCTGGAAATTGTTTCAAGCTTCAGTGTTGGTGTTGATAAAATTGATCTTAACAAATGTAAGGAGAAAGGGATTCGTGTTACCAATACTCCTGATGTTTTGACTGATGATGTTGCTGATTTGGCTATTGGTTTGATTCTTACGCTTCTTAGAAGGATTTGTGAATCTGATCGATATGTTAGAAATGGAAATTGGAAGAGTGGTGACTATAAGTTGACCACTAAGTTCTCTGGGAAAACTGTTGGCATTATTGGGCTGGGAAGGATTGGCACAGCAATTGCCAAGAGAGCTGAAGGTTTTAATTGTCCAATAAGTTACTTTTCTAGAACTCAAAAGCAGGAGTCAAAATACAAGTACTATCCAAGTGTTGTTGAGTTGGCATCCAACTGTGATATACTAGTTGTTGCCTGCCCTCTTACAGAGGAGACCCATCACATCATCAACCGGGAGGTCATTAATGCGCTTGGTCCGAAGGGTTACCTAATTAACATTGGCCGAGGTAAGCATGTTGATGAACCAGAGCTAGTCTCTGCATTGGTTGAGGGTCGTTTGGGTGGAGCTGGACTCGATGTGTTTGAAAACGAGCCTCATGTTCCTGAAGAGCTATTTGGGCTAGAAAATGTTGTCTTGTTGCCTCATGTTGGAAGCGGCACGGTAGAAACTCGAACTGCCATGGCTGACCTTGTTCTTGGAAACTTGGAGGCTCATTTTCTTGGAAAGCCTCTGTTAACACCCTTGGTTTAA 942 0.431 MGSISVLLVVQVIPYLEQELNKRYNLFRIWDFPQKSQLLTQHASSIRAVVGNANAGADAELIDALPKLEIVSSFSVGVDKIDLNKCKEKGIRVTNTPDVLTDDVADLAIGLILTLLRRICESDRYVRNGNWKSGDYKLTTKFSGKTVGIIGLGRIGTAIAKRAEGFNCPISYFSRTQKQESKYKYYPSVVELASNCDILVVACPLTEETHHIINREVINALGPKGYLINIGRGKHVDEPELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLLPHVGSGTVETRTAMADLVLGNLEAHFLGKPLLTPLV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00295 313 CDD HPPR 4 303 - -
Tsu06g00295 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 282 IPR036291 -
Tsu06g00295 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 310 IPR006139 GO:0016616|GO:0051287
Tsu06g00295 313 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 IPR006140 GO:0051287
Tsu06g00295 313 Gene3D - 101 284 - -
Tsu06g00295 313 PANTHER D-GLYCERATE DEHYDROGENASE/HYDROXYPYRUVATE REDUCTASE 1 313 - -
Tsu06g00295 313 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 IPR029752 -
Tsu06g00295 313 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 6 134 - -
Tsu06g00295 313 Gene3D - 17 307 - -
Tsu06g00295 313 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00295 Tsu-Chr6 2422895 2426086 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00295 - K18606 gmx:100779623 548.895