Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00288 ATggacaaaaaagaagaagaaaacctCAAATTTTCAGCGTTCCCTTTCAAACCCTATTCTATTCAAATCGATTTCATGAACGCACTTTATCAATCTCTCAATCAAGGTGGCATCTCCATGTTAGAAAGCCCAACTGGTACTGGAAAAACCATGAGTGTAATTTGCAGTGCATTGCAATGGGTAATTGATCGACGGCagcaacaagaagaagaaaatgctTTAGGGTTTATGAGTGGGAAGAATGAAGGTTTGGATGATGAACCTGATTGGATGAGAGATTTTGTTGTTAACAATAATGATAAGAAAGAGGTAAAAAGAAAGATTAAGAAGGAGAAATTTAGGGCTGTGTTAGGGAAATCTGATAATGACAGTAGGAAAAAGAGTAATGatgttttgaagaagaaaattgatgaaatgggtgatgatgaagatgagttTTTACTTGAAGAATATGAGAGTGAGGATGAGAAAGTTGAGGGTAGTAGTAGTGTAGTGTCTAAGAGGAAAGCAAGTAAAAGTAGTTTTAGTTCTTCGAGTGAAGACGAGTCTTGTGAGGATGATGAGGAGGAAGAGGAGAAGAAGTTTAAGGTTTATTTTTGTAGTAGGACACATACGCAGCTTTCGCAGTTCGTAAAGGAGTTGAGGAAGACGGTGTTTGCTGATGAGATTGATGTTGTGAGTTTAGGTTCCAGGAAAAATCTTTGTATTAATCAAGAAGTACTTGCACTTGGAAATTCGACTCGCATAAATGAGAGATGCTTGGAActccaaaagaaaaagaaaaatgattctACAAAAGTTAAGAACATAAGAGTAGGTACAGGAGCACGCAGAACAAAGGCCTCCTCTGGTTGCCCGATGCTTAAAAAACATAGACTACAAAAAGAATTCAGGAATGAGGTATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCAGAAAGTTGATCTTGTGGTCCTTCCATATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAATCGAATATTGTTATAATAGACGAGGCTCATAATTTGGCTGATTCACTCATCAACATGTACGATTCCAAAATTACTTTATCACAGCTAGAGAATGTGCATCGCCATGTGGAGCAGTACTTTGTGAGATTCCGGAACCTTTTGGGAGCTGCTAATAGGAGATATATTCAAACCCTCATGGTCCTCATACAAGCATTTCTCCGGGTACTACACAATGAGAAAGACGGAAATCTCATAGATTCATGTCGTGATATAGAACAGGCTTCTGAAAAAAGGAGGGCCTCTGATTTTACTATGGCCATCAacgattttttatttgaactaaATATAGACAATATCAACTTGGTCAAATTGCTAAAGTATGTAAAGGAAAGTAATATCATGCACAAGGTTAGTGGCTATGGAGAAAAGATGGCTACCTCGGAGAAGGTATCAGCACTTAATGTAACAGGGGAACATGGTGAAGATGGAAGCTGCCAGTCTGCTTTCCAGGCATTAGCTGACATGTTGCTATCACTGGTAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGTTCAACAAGCTTCAGGAAACAAGGTCAAGGAAGATATATTAAATATGTTATGCTCAGTGCAGAGAAGATTTTCTCCGAGATTGTAGATGAAGCACATGCTGTCGTGTTAGTAGGTGGAACACTTCAGCCAATAGAAGAGACAAGGGAAAGACTCTTTCCAAGGTTACCATCAAATCAGCTGCATTTCTTTTCTTGTGGTCATATTGTCCCGCCAGAGAGCATTATGCCAATTGCAGTTTCCCGTGGGCCCAGTGGCCGCTCCTTCGATTTTAGCTACAGCTCCAGGAGCTCAGCAGATATGATGCGAGAATTAGGTCTTTTGTTATGCAACTTGGTGTCTGTAGTTCCCCAAGGAATTGTAGTGTTCTTCCCTTCTTTTGATTATGAAAGTAGAGTCTATGAAAACTGGGAGTCTTCTGACATCCTTGAAAGGATTACAAAGAGGAAGCGTGTTTTTAGAGAGCCTAGAAACAATATGGACGTTGAATCTGTTCTCAAGGAATATAAAGATATCATTTATTCTCCATCAAGTGTGACTTCAGAAGTAAACCAAGCATCTCATACTGGTGCAGTACTCCTTGCTGTCGTTGGTGCAAAGTTATCCGAAGGGATCAACTTGAGTGATGGGATGGGTCGATGCGTAATCATGGTTGGTCTACCATATGCTAGCCCTTCTGACATTGAGTTATTGGAGAGGATAAAACACATTGATGGTTTTAAAAATTCCAAGTCCCTTGACAATCCTGGATTTTCTGCTAGTTATGATGTATACGGAGGAGATATACAAGGTGGTTTTAGCATATTAAGAAATTGCAGTCACAGGGGGAAGGAGTATTACGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCACATCAATGACTATGCAGCTATTTTATTGGTTGACACAAGGTATGCATCGGATTCCTCAAAACGGAGTTTTGCCCACCCAACCACCAAGCTCCCCAATTGGATAAAAGATCGCCTCGTTACTTCTACCAAAAACTATGGTGAAGTGCATAGGTTGCTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAG 2721 0.3807 MDKKEEENLKFSAFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVIDRRQQQEEENALGFMSGKNEGLDDEPDWMRDFVVNNNDKKEVKRKIKKEKFRAVLGKSDNDSRKKSNDVLKKKIDEMGDDEDEFLLEEYESEDEKVEGSSSVVSKRKASKSSFSSSSEDESCEDDEEEEEKKFKVYFCSRTHTQLSQFVKELRKTVFADEIDVVSLGSRKNLCINQEVLALGNSTRINERCLELQKKKKNDSTKVKNIRVGTGARRTKASSGCPMLKKHRLQKEFRNEVSQQGPLDIEDLANLGRTMGTCPYYGSRSMVQKVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLINMYDSKITLSQLENVHRHVEQYFVRFRNLLGAANRRYIQTLMVLIQAFLRVLHNEKDGNLIDSCRDIEQASEKRRASDFTMAINDFLFELNIDNINLVKLLKYVKESNIMHKVSGYGEKMATSEKVSALNVTGEHGEDGSCQSAFQALADMLLSLVNKDSDGRIIISRSSSTSFRKQGQGRYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPRLPSNQLHFFSCGHIVPPESIMPIAVSRGPSGRSFDFSYSSRSSADMMRELGLLLCNLVSVVPQGIVVFFPSFDYESRVYENWESSDILERITKRKRVFREPRNNMDVESVLKEYKDIIYSPSSVTSEVNQASHTGAVLLAVVGAKLSEGINLSDGMGRCVIMVGLPYASPSDIELLERIKHIDGFKNSKSLDNPGFSASYDVYGGDIQGGFSILRNCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFAHPTTKLPNWIKDRLVTSTKNYGEVHRLLHQFFKLKKTCCQ 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00288 906 SMART deadxpd 10 409 IPR006554 GO:0003678|GO:0016818
Tsu06g00288 906 SMART ultradead3 14 445 IPR014001 -
Tsu06g00288 906 Gene3D - 169 426 IPR027417 -
Tsu06g00288 906 Pfam DEAD_2 199 387 IPR010614 GO:0003677|GO:0003678|GO:0005524
Tsu06g00288 906 Gene3D - 631 872 IPR027417 -
Tsu06g00288 906 Gene3D - 15 83 IPR027417 -
Tsu06g00288 906 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 10 890 IPR028331 -
Tsu06g00288 906 TIGRFAM rad3: DNA repair helicase (rad3) 134 782 IPR013020 GO:0003678
Tsu06g00288 906 CDD SF2_C_XPD 617 856 - -
Tsu06g00288 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 8 426 IPR014013 GO:0005524
Tsu06g00288 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 395 IPR027417 -
Tsu06g00288 906 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 10 890 IPR045028 -
Tsu06g00288 906 Pfam Helicase C-terminal domain 653 867 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Tsu06g00288 906 SMART Cxpdneu3 671 858 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00288 Tsu-Chr6 2383528 2389160 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00288 K11273 - gmx:106794132 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00288 06 2383528 2389160 Tsu06g00288 06 2383528 2389160 ECH