Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00260 ATGGCTAATTCTGATTATGAGAGTGATCCTGAAGAAGCGAAAGGATTGGTTCTTACAATGCGGAGAAATGTGgctagtgatgatgaagaagaagatagagAAGGAGAAGGTGatagagatgatgatgatgatgattcagtTAAGAGTGAAGATCTTCGTGCTAGGGGTCGTTCTGATGTTTCTGATGGTGAAGGTGGTGTTGCTGATTATGATGATGACGATAATGAGgaaattgaagaggaagaagaatatgaagaagttgatgaagaagaagaagaagaagagtatgaggaagtttatgtggaGAAAGGTGTAAATGAGGTTGAGGGTTCAGTGATTGTGCTAAATGAATCTGTTGGTGATGTTATACCCTCTTTGGGTGAAGATTCTGCTGAGGTCAATACTGAGGAGAAAAAGGAGAATGAACCATTTGCTGTGCCCACTGCTGGTGCCTTTTACATGCATGATGATCGTTTTAGGGACAATTCCGGTGCTCGCCAAAGGCGGATGCATGGTGGAAGGAGATTGTGGGAGTCCAAAGATGACAAGAAATGGGGAcatgataaatttgaggaaattTCAGTGCAGGATAGGCGTTATGATGAGAGGAGGAGACCTTCTAGGggtaattttcgagggcgagGTAGAGCTCGTGGCACTGATCGTGGGGGACATGTTCGAGGAAACAGGAGAGAATATAATGACAGAGAATTTACCAACAGAGAATATAATGATGGTAGCAATCAAAGTCAGGTGCCTAAGGTTGTTGTGAAAGGAAGAGGGCCACGGAGGTACGAACCTACTAACAGAAGGAATGGTCCAGCTCCTCAGGTGCAAAATAAACAaTCTGGAAAATCTCAAGAGAAAACCTCACATGTTAGTTCAGAGAGAGTTTCCAAACCAGCATCCAATGCAGAATCTGACCCCGTGCCTGCTAAGAAAAActcaatttcttcaaatttgAACTATGCATCCCCGCCATTTTATCCATCCGGCTCTTCCAACAAAGAAATTAATCTGGCACAAAAACAGGATGTACAAATTGGCAGCACCAGCAGGAATATTCGCCCTGGTATGAATGAGGGTTTTCCAGTCCAACAAAATAATGCAATTCATCGGGGAAAGAATGTTGTTAATTCCATCAGCATGGATAAGCTGTATATTGATGAGTCTGTCGGCCCATCTGTTGGGAAGCCTTTGAACAATGTTCATTTGGCACCATCTGGGCATGCTTCTCAGTCTCCTTTTCCCCGACCTGCTGGGCCTGGGAGAGGTGCACCAATCCCATTACAGATGAACTATCCACATGCTCCCTCACATAATCAAGCAACTAAAGTTTCTCCAATGCAAATGCAAGCTATTCAGAGAAGTTCTGTACCGGGGCGGACTTCAACGTCTGTGCAAGCTACTGCTCCACTGACGGGCCATCGATCTGGTAGTGGATCTCAGTCTTCATCTCCTCCAAAAAGATCTGCGTCAATTAATTCACTGGATTCTGGAGACATGGATGCTTCCTCGGAATCAGGTAAAGCCAAAGGAGCATTGGTTGGGAAGGGACGAGGAGCTCCTCAGGGTGCTGGAAGGGGACCTTTTGTTTATGGTGGGGCACAGGTAATGGGGGCTGCTGGAAATATGGCCATCAGTCAAGGAGATCCAAACTTCCCTGCCTTCTTGCCAGTCATGCAATTTGGGGGCCAGCATCCTGCTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTCCTGGAAAATCAGAAATGACATGGCTACCAGTCTTGGCTGGTGCTGCAGGGGCTTTAGGGGCTCAATACTGTTCACCGTACCTTGCTGTTGATGGTGGTTACGGTCGACAGCCTGGACAGACCTCTGCAATTGATTCTCCAAGCAAGGAAAATAGTGTGAataaagctaataataataatgaattgaAGCCACCACAAAAATCTGATCTGGTAAACGACGAGTATGGACAACGTCAGAATAAACCTCGCAGATATTCGGAGATGAATTTTGGTCAGTAA 2031 0.4165 MANSDYESDPEEAKGLVLTMRRNVASDDEEEDREGEGDRDDDDDDSVKSEDLRARGRSDVSDGEGGVADYDDDDNEEIEEEEEYEEVDEEEEEEEYEEVYVEKGVNEVEGSVIVLNESVGDVIPSLGEDSAEVNTEEKKENEPFAVPTAGAFYMHDDRFRDNSGARQRRMHGGRRLWESKDDKKWGHDKFEEISVQDRRYDERRRPSRGNFRGRGRARGTDRGGHVRGNRREYNDREFTNREYNDGSNQSQVPKVVVKGRGPRRYEPTNRRNGPAPQVQNKQSGKSQEKTSHVSSERVSKPASNAESDPVPAKKNSISSNLNYASPPFYPSGSSNKEINLAQKQDVQIGSTSRNIRPGMNEGFPVQQNNAIHRGKNVVNSISMDKLYIDESVGPSVGKPLNNVHLAPSGHASQSPFPRPAGPGRGAPIPLQMNYPHAPSHNQATKVSPMQMQAIQRSSVPGRTSTSVQATAPLTGHRSGSGSQSSSPPKRSASINSLDSGDMDASSESGKAKGALVGKGRGAPQGAGRGPFVYGGAQVMGAAGNMAISQGDPNFPAFLPVMQFGGQHPAGMGVPAVGMAFPGYVPGKSEMTWLPVLAGAAGALGAQYCSPYLAVDGGYGRQPGQTSAIDSPSKENSVNKANNNNELKPPQKSDLVNDEYGQRQNKPRRYSEMNFGQ 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00260 676 Pfam CASC3/Barentsz eIF4AIII binding 129 216 IPR018545 GO:0003729|GO:0006397|GO:0035145
Tsu06g00260 676 MobiDBLite consensus disorder prediction 435 503 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 197 368 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 197 242 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 46 64 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 272 289 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 309 368 - -
Tsu06g00260 676 PANTHER PROTEIN MLN51 HOMOLOG 3 676 - -
Tsu06g00260 676 SMART Btz_2 113 221 IPR018545 GO:0003729|GO:0006397|GO:0035145
Tsu06g00260 676 Coils Coil 70 97 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 623 650 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 1 96 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 29 45 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 65 96 - -
Tsu06g00260 676 MobiDBLite consensus disorder prediction 621 676 - -
Tsu06g00260 676 PANTHER PROTEIN MLN51 HOMOLOG 3 676 IPR044796 GO:0003729|GO:0006397|GO:0035145
Tsu06g00260 676 MobiDBLite consensus disorder prediction 403 527 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00260 - - mtr:MTR_4g011920 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00260 06 2166714 2171996 Tsu06g00260 06 2166714 2171996 ECH