Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00199 atggAGATTGAAACTCAGCAGAATGATGTCAAAGATGAAGTTTTGTCGGTTGAACTTTCAGCTCCTCCTTCTTGGAAGAAACtgTTCTTCCCCAAGAAAGTAGGAACGCCAAGAAAAAGCGAGATCGTATTCGTTGCTCCAACCGGAGAAGAGATAAGCTCCAAAAAACAACTGGAGAAGTACCTAAAGGCACATCCAGGGAATCCTAACATATCAGAGTTTGATTGGGGAACTGGCGAGACACCAAGGCGATCCTCAAGGATTAGTGAGAAGGTCAAAACAACTCCACCACCCTCAGAAGCTGAGCCTCCGAAGAAACGTAGTCGAAAATCATCTGGTTCAAAGAAGGATGACAAGGAAACTGAATCTCCTGCAGAGGAAGGCAAGGAAAAGTCTTCTGTGGAAGAACCGAAAGGCGATCCAATTGACACTGATAACAACGTCGATGATAAAACAAAGAATGATGCTGCTGAGGAAATTAAGCAAAGTAATGCTGAAGGTGAAACTTTTCAAGAAGCTTTGAATGCCGTGGTTGATGAGGAAATAGTTGAAAAGGCAAAAGAAAACGGTACAATTGACAGTAGTAAGCAGGAAAAATCAGGCGGCGCCGAGGAAAATGGAGCTGAGAAAGTGAGTCATGATGCTGAAAATACTAATGCAGAAGGTGAACTTGTTCAAGAAGCTTTGAATGTTGTGGTCGTGGAGGCAATAGTTGAATCGGAAAAAGAAAACGGAACAATTGACGGAAGTAAGCAGGAAAAATCAGGTGGTGCCCAGGAAAACGCAGCAGCTGAAAATGCAAGTCTCAATGTTGAAGATATTATTAATGGTAAGAATGAAATTTCAGCAAGTGATGAAAAACAAACCATTCAAGGTGAGGAACAAGTGAAGAAAATGGTTGACAATGAAAGTGTAATTTGGAGCGTTGCTCAATGA 936 0.4156 MEIETQQNDVKDEVLSVELSAPPSWKKLFFPKKVGTPRKSEIVFVAPTGEEISSKKQLEKYLKAHPGNPNISEFDWGTGETPRRSSRISEKVKTTPPPSEAEPPKKRSRKSSGSKKDDKETESPAEEGKEKSSVEEPKGDPIDTDNNVDDKTKNDAAEEIKQSNAEGETFQEALNAVVDEEIVEKAKENGTIDSSKQEKSGGAEENGAEKVSHDAENTNAEGELVQEALNVVVVEAIVESEKENGTIDGSKQEKSGGAQENAAAENASLNVEDIINGKNEISASDEKQTIQGEEQVKKMVDNESVIWSVAQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00199 311 Gene3D - 2 140 - -
Tsu06g00199 311 SUPERFAMILY DNA-binding domain 12 108 IPR016177 GO:0003677
Tsu06g00199 311 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 11 81 IPR001739 GO:0003677
Tsu06g00199 311 Pfam Methyl-CpG binding domain 19 80 IPR001739 GO:0003677
Tsu06g00199 311 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 10 295 IPR039622 -
Tsu06g00199 311 MobiDBLite consensus disorder prediction 61 219 - -
Tsu06g00199 311 MobiDBLite consensus disorder prediction 100 162 - -
Tsu06g00199 311 MobiDBLite consensus disorder prediction 250 271 - -
Tsu06g00199 311 MobiDBLite consensus disorder prediction 240 271 - -
Tsu06g00199 311 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE 10 295 - -
Tsu06g00199 311 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00199 Tsu-Chr6 1663971 1666082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00199 - - lja:Lj3g3v2200290.1 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00199 06 1663971 1666082 Tsu06g00199 06 1663971 1666082 ECH