Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00174 ATGCTTCCACGGGATATAAGTCagcaaattttaaataatttgatctACTCCCGACGTCTTACGGGTGGTTCTTTCGAAGCTTTCCGAGATTGTGCTCTCCAGGATCTATACTTGGGAGAATATGTTGGTGTTGATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCTTTACTTTCGGTAGATCTTTCTGGGTGTGATGTTACTGATTTTGGATTGACTTACCTTAAAGATTGTCAGAGTCTACTGTCCTTAAATCTAAATTACTGTGACCAAATTTCAGATCATGGACTGGAATGCATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTATTAGAAGAAATGATTCAATATCAGCTCAAGGAATGAGTGCCTTCTCTGGTCTTGTCAACTTGGTCAAGTTGGATTTGGAGAGATGTACTGGGATTCATGGAGGCATTGTCCATCTTCAAGGTTTAACTAAGTTGGAATCTCTCAATATGAGGTGGTGTAATTGCATAACAGATTCTGATATGAAGCCTCTATCAGAACTTACAAGCTTGACAAGTCTAGAGATTTCATGTAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAGAGGATTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACATCTGCATGCTTGGATTCTCTGGCAGAACTTCCTGCACTGTCAAACTTGAATCTTAATCGATGCAATATTTCTGACAGAGGGTGTGAAAAGTTTTCAAGACTGGAAAAGTTGAAAGTATTAAACTTGGGATTTAATGACATAGGAGATACATGTTTAGCTCATTTGAAAGGAATGACAAAGTTGGAGAACTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAGCAATTGATCTGCTTGGAATTGTCTGATACGGAAGTTGGAAACAATGGCCTAGGGCATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATTTGTCCTTCACTGTTGTTAGTGATAGTGGTTTAAGGAAATTGTGTGGACTATCATCTCTGAAGTTGCTTAATTTGGATGCTTATCAAATTACTGATGCTGGACTGGAAACACTTACAAGTTTGACTGGCCTCACTGACCTTGATTTGTTTGGCGCTCGGATCACAGATGTTGGGACAAATCATTTGAAAAAATTCAAAAACCTGAGGTCCTTGGAAATATGCAGTGGTGGATTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCGCTAATATGCTTAAATTTATCACAAAACAGCTGCCTTACGGACAAAACAGTGGAGTTAATTGCTGGACTCACTTCATTGGTTTCGTTGAATCTTTCAAATTCAAGCATCACCTCTGCTGGACTACCACATTTGAAAACACTGAAAAACTTGAGATCTCTGACGTTGGAGTCATGTAGGGTGACGGCAAACGATATAAAGAAATTTAAATCAATGCACCTCCCGAATTTGGTAAGCTTTAGGCCCGAGTAG 1512 0.3882 MLPRDISQQILNNLIYSRRLTGGSFEAFRDCALQDLYLGEYVGVDDSWMDVISSQGSSLLSVDLSGCDVTDFGLTYLKDCQSLLSLNLNYCDQISDHGLECISGLSNLTSLSIRRNDSISAQGMSAFSGLVNLVKLDLERCTGIHGGIVHLQGLTKLESLNMRWCNCITDSDMKPLSELTSLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLAELPALSNLNLNRCNISDRGCEKFSRLEKLKVLNLGFNDIGDTCLAHLKGMTKLENLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLGHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKLLNLDAYQITDAGLETLTSLTGLTDLDLFGARITDVGTNHLKKFKNLRSLEICSGGLTDAGVKNIKELSSLICLNLSQNSCLTDKTVELIAGLTSLVSLNLSNSSITSAGLPHLKTLKNLRSLTLESCRVTANDIKKFKSMHLPNLVSFRPE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00174 503 SUPERFAMILY RNI-like 52 364 - -
Tsu06g00174 503 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Tsu06g00174 503 Pfam Leucine rich repeat 228 288 IPR001611 GO:0005515
Tsu06g00174 503 SUPERFAMILY RNI-like 301 496 - -
Tsu06g00174 503 Gene3D Ribonuclease Inhibitor 406 498 IPR032675 -
Tsu06g00174 503 Gene3D Ribonuclease Inhibitor 308 405 IPR032675 -
Tsu06g00174 503 Gene3D Ribonuclease Inhibitor 146 224 IPR032675 -
Tsu06g00174 503 Gene3D Ribonuclease Inhibitor 48 145 IPR032675 -
Tsu06g00174 503 Gene3D Ribonuclease Inhibitor 225 307 IPR032675 -
Tsu06g00174 503 SMART LRR_CC_2 275 299 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 419 444 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 323 347 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 80 105 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 154 179 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 106 130 IPR006553 -
Tsu06g00174 503 SMART LRR_CC_2 227 251 IPR006553 -
Tsu06g00174 503 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 1 460 - -
Tsu06g00174 503 Pfam Leucine Rich repeat 324 345 IPR001611 GO:0005515
Tsu06g00174 503 Pfam Leucine Rich repeat 106 128 IPR001611 GO:0005515
Tsu06g00174 503 Pfam Leucine Rich repeat 58 77 IPR001611 GO:0005515
Tsu06g00174 503 Pfam Leucine Rich repeat 80 103 IPR001611 GO:0005515
Tsu06g00174 503 Pfam Leucine Rich repeat 155 177 IPR001611 GO:0005515
Tsu06g00174 503 PANTHER UNCHARACTERIZED 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00174 Tsu-Chr6 1453225 1463764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00174 203 440 Receptor kinase-like Gene Family AT1G75820 25.523 5.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00174 - - gmx:100800666 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00174 06 1453225 1463764 Tsu06g00174 06 1453225 1463764 ECH