Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00173 ATGTCATCTCTGAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAATGGGAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATACGAAAGCAAAAATATCTTGAGGCATTGGATAAACATGATCGGTCGAAGGCTGTAGAGATATTGGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAATGAACAGTTGTCTAAGTATGGTGATACTAAGTCTGCGCGGGCAATCATGTTGGTTGAGCTTAAGAAGCTGATTGAAGCAAATCCCTTATTTCGCGACAAATTGCAATTTCCTAACCTTAAAAACTCGAGGTTGAGGACACTAATCAATCaaagCTTGAATTGGCAACATCAACTTTGTAAGAATCCACGTCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAACAATCCACTATTAGGATCCTTACCAAAGGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTCCAACCTACTCCGGCACCAGTGCCAACACAGCTCGCCGGTTGGATGTCCAATCCTACCCCTGTAGCACATGCTGCAGTTTCTGGTGGAGGAGCTATAGGTCTCGGTGCTCCATCAATGCCCGGTGCTTTGAAGCATCCTCGGACGCCTCCACCTAATCTTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATAACAGATGAGGTAAATCTACCTGTCAATGTGTTGTCGACACCATTCCCAGGGCATGGTCATAGTCAGGCTTTTAATGCACCTGATGACTTGCCGCTGCCAAAGACTGTCATGCGAACTCTGAATCAGGGCTCATCTCCTATGAGCATGGACTTCCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATTGCATTATGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCGAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTCCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTTAACCGTGTGATTTGGAGTCCTGATGGCGCTTTATTTGGAGTTGCTTATTCAAGGCACATTGTTCAAATATACTCTTACCATGGTGGGGAAGAAGTTCGTCAGCACTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTGTGTGTGATAACTTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGAACAAAGCAATATACATTTGAAGGTCACGAGGCTCCGGTTTATTCAGTCTGTCCGCATTACAAAGAAAACATTCAGTTCATCTTTTCAACAGCGCTAGatggaaaaataaaagcatGGTTGTATGACAATCTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACAATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGGACAAGTAAAGACGGAGAATCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAACGGTCTTCAGGCGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCCGGCGATGATTTCTCGATTAAATTTTGGGATATGGATAATATTCAGCTTTTGACAACCGTTGATGCTGATGGGGGTCTTCCTGCAAGTCCACGTATTCGTTTTAACAAGGAGGGAACTCTGTTAGCTGTCTCAGCAAATGATAATGGAATCAAAATTATAGCCAATGCTGAGGGTATTCGTTTACTGCGTACATTAGAGAATTCTATGTATGATGCATCAAGAGCATCCGAATTAGCAAAGCCTACTATAAATTCAATGACTTCTGCTGCCGCTGCAACTAGTGCTGCGCTAGCTGAGAGAGCTTCATCCGCAGCGGCTATTGCTGGAATGAACGGGGACGCTCGGAACATGGGCGATGTTAAACCTAGAATAAGTgaagaatccaatgacaagtcAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCATTGTAGATCCTTGAAGCTGCCAGAGAATGTTAGAGTAAACAAGATATCGAGGTTGATCTATACAAATTCTGGTAATGCTATTCTAGCGTTAGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGATCGTAATTCATCTGGCAAGGTGCGTGGACATGCCAATGCCTCTGTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACTAATGACATTGCTGATAGCAATCCTGAAGATTCTGTTCCCTGCTTCGCTCTGTCGAAAAATGATTCGTATGTAATGTCTGCATCAGGAGGGAAGATATCCTTGTTCAACATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCACCACCTGCTGCTACCTTTCTTGCTTTCCATCCTCAGGACAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATACAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATTACTGGTCTTGCTTTCTCCCATGTATTGAATGTTCTTGTTTCATCCGGTGCGGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAGACCAGATTCTTGCAGCTACCTCCCGGGAGGACTCCATCAGCACAGTCAGATACGCGTGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTTGCCATTTTTGAAGCAACTAAGCTAGAATGTCTAAAGCAGTGGGCTCCACGGGATTCTTCTGCACCGATATCGCATGCAACATTTTCGTGTGACAGCCAGCTGATATATGCAAGCTTTTTAGATGCGACTGTCTGTGTATTTAATGCTTCAAATCTCAGATTACGGTGTCGCATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAATTCAAATGTACAACCACTAGTAATTGCAGCACATCCACAAGAACCAAATCAGTTTGCTGTAGGACTATCTGATGGTGGAGTTCATGTGTTCGAGCCACTCGAATCCGAAGCCAAATGGGGCGTGCCACCTCCGAATGAAAACGGATCAGCAAGCAATAATGTAGCAGTAGCTACTTCAGTTGGACTTTCTTCAGATCAAGCACAAAGATGA 3423 0.4259 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTQLAGWMSNPTPVAHAAVSGGGAIGLGAPSMPGALKHPRTPPPNLSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSTPFPGHGHSQAFNAPDDLPLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGEEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSSGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGTLLAVSANDNGIKIIANAEGIRLLRTLENSMYDASRASELAKPTINSMTSAAAATSAALAERASSAAAIAGMNGDARNMGDVKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNDRNSSGKVRGHANASVQPQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSNSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEAKWGVPPPNENGSASNNVAVATSVGLSSDQAQR 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00173 1140 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Tsu06g00173 1140 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1140 IPR027728 GO:0006355
Tsu06g00173 1140 SMART Lish 4 36 IPR006594 GO:0005515
Tsu06g00173 1140 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Tsu06g00173 1140 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 965 IPR001680 GO:0005515
Tsu06g00173 1140 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 425 961 IPR011047 -
Tsu06g00173 1140 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tsu06g00173 1140 Gene3D - 549 687 IPR015943 GO:0005515
Tsu06g00173 1140 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tsu06g00173 1140 Gene3D - 773 1130 IPR015943 GO:0005515
Tsu06g00173 1140 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1140 - -
Tsu06g00173 1140 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 925 1108 - -
Tsu06g00173 1140 Pfam WD domain, G-beta repeat 923 956 IPR001680 GO:0005515
Tsu06g00173 1140 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Tsu06g00173 1140 CDD WD40 360 668 - -
Tsu06g00173 1140 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 956 - -
Tsu06g00173 1140 SUPERFAMILY WD40 repeat-like 351 453 IPR036322 GO:0005515
Tsu06g00173 1140 Gene3D - 331 548 IPR015943 GO:0005515
Tsu06g00173 1140 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Tsu06g00173 1140 SMART ctlh 34 92 IPR006595 -
Tsu06g00173 1140 SMART WD40_4 540 583 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 917 956 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 452 493 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 346 385 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 874 914 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 407 446 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 629 670 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 496 537 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 1062 1102 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 586 626 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 1008 1049 IPR001680 GO:0005515
Tsu06g00173 1140 SMART WD40_4 834 871 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00173 Tsu-Chr6 1441928 1450400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00173 457 633 Miscellaneous Gene Families AT5G08390 23.889 4.09e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00173 - - gmx:100795759 2099.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00173 06 1441928 1450400 Tsu06g00173 06 1441928 1450400 ECH