Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00056 ATGGCTTCTTCTTCTGCTGATGATGATAGAGATACACTGAAGAGGCTTAAACATTTGGGGAGAAAACTATCCAAAAACCTAACTTCTTCTGTTGATAACCTTCTTCAATTACTTGATAAATTGGAGCTGGTGTTATCAAACTTGGATCAAAATCCAGCGAGACCAATTCAAGAATCACTTGTACTTCCAATGAAGACACTGATTTCCGATGAACTTTTGAGACACACAGATGACGATGTTAAGATTTCAGTTACAGCTTGTCTCACTGAGGTTGCAAGAATTACAGCACCAAATGCCCCTTATGAAGATGAACAAATGAAGGAATTTTTTAAGCTTACAGTGGCAGCTTTTGAAAACTTGTCTCATGTATCTGGACGCCGATACGAGAAAGCACTTACCATACTTCAAACTTTTTCAAAGATTAAAATATTCTTGATCATGCTGGACCTTCAGTGTGATGACCTGGTTATTCAAATGTTTAAGGATTTCTTGAGAATTATAAGGGAAAACCATTCTAGTAATGTAATTGAATCAATGGAGATACTAATGACTGGGGTACTCGATGAAAGCGACGATATTTCCTCGGATCTTCTTAGGCCTTTGTTAGATAGTGTAAGAAAAGAGAACCAGATTGTTTCACCGATTTCTTGGACCTTGGGGGAGAAAGTATTTACCAATTGTGCTGTCAAACTTAAACCTTATCTCATGCAAACAGTTGATTCCTCAGGAAGTGCTCTTGATGAGTATGCGCAAATAGTAGCTTCTATTTGCCAGAATCAATCTGAATCCCCGGAACATAATCATTCAACGGCGGTTCAGGCAATTGAGAACATTGTTGATGTACCTAAAGATGCTCATGAAAAACCCTGTGACGTGACCAGAGGGTTTGAAACAGATAATATTTGTGTGAGAGATGCTGAAATTACGGATGACACAAACTCGAAAATAAAAAGTACCGATGCTGTTACAGTGGATGATGAATTTACAAAAAGTTCTGGTTCAAAAACAGTGGACGATGAATTTACAAAAAGTTCTGGTTCAAAAAGGGAACAACATTCTTGTCCAACTACGAACTCCGAAAGACAAAATACAAAGACAAATTCTGAAACTAGCAATTTAGAGTCAGTTGAGAAACTGAACTCCGAAACTCAGCTGGATACTGTGCCTAGGAAGAGAGTGCGTAAACCTAATTCTTTATTGAATCCAGAGGAAGGCTATGATCACCCATGGATTTCTAGAAAATCATCTCGATCCAGAAAGGCTCGTGATAACGGCAATGCTCTTTCACCAGCTGATAACTCTACATCCAGTAAGGATATGACGCAGCCAAAGCCTGAAACTGTCGGTGAAGCTCTAGAAAATGGGAATGTTGAAAAACCTGTTCAACCCGAAAACCCCTCTGATAAAAATAGTGATGTTCCATCCATTGAAAGTCCTGCTTCTACCAAGGGGATTAGACTGTCAAATCCTGAAGATATGAGCGCAGCTAATGAAGCTTCAGTTTCAGAACCTAAAGATGGAGAGGAACCTAAAGACGGAGAGAATACAAATGCTGTTCCCTTTACAAAGCATACCATTATTGACGGAAGCTCCACCAAAAGATGCCGCCGACGAAGGAAAATTAGTAGCATTGGGGATCAAAATGATCATCCTAATTCTGCGTCAATATTGAAGGATGATAATTTGAATACTTCACTTAAGAAGACTTCTTTGGAATCCCCTGGTGCTAGGCTGAAAAAGCAATCTGAAATAAGGAAGGATTCTGCAGTGACGCATGAGGAACCCGTTAGAAACATCAAAGTATCTATAAAGTTTGATGGAAAAATTGTTGTGCCTCCTGTATCTATAGTTGCTAAGGTGGAATCTGAGGATCTTTGTGAGAATGAGGAGAAACACAAGTTGAATTCGGATATGAAGGTAGAAAATAGCGAAGAAGGAAGATTATCAGACCATGTAGAAGTTAACAAAAGGAGGAGACGAACTGCTACTTCTAATAAAGGTTTCAACAAATCATCTGCTATGAAGGCACATGAACCTCAAGAACTTGGTAACTCATTAGTTGGTAAGAGGATCAAGATCTGGTGGCCATTGGACAAGACatATTATGATGGTGTTGTCAATGCTTATGATCACGTCAAAGGAAAGCACAAGGTGTTGTACGACGATGGTGTCGAGGAACagttaaatctaaaaaaacagCGCTGGGAACTAGTTGATGTTACTGTTGTACCCGATGAGggcaaaaagaaaaggaaaaaaaaacattga 2268 0.3854 MASSSADDDRDTLKRLKHLGRKLSKNLTSSVDNLLQLLDKLELVLSNLDQNPARPIQESLVLPMKTLISDELLRHTDDDVKISVTACLTEVARITAPNAPYEDEQMKEFFKLTVAAFENLSHVSGRRYEKALTILQTFSKIKIFLIMLDLQCDDLVIQMFKDFLRIIRENHSSNVIESMEILMTGVLDESDDISSDLLRPLLDSVRKENQIVSPISWTLGEKVFTNCAVKLKPYLMQTVDSSGSALDEYAQIVASICQNQSESPEHNHSTAVQAIENIVDVPKDAHEKPCDVTRGFETDNICVRDAEITDDTNSKIKSTDAVTVDDEFTKSSGSKTVDDEFTKSSGSKREQHSCPTTNSERQNTKTNSETSNLESVEKLNSETQLDTVPRKRVRKPNSLLNPEEGYDHPWISRKSSRSRKARDNGNALSPADNSTSSKDMTQPKPETVGEALENGNVEKPVQPENPSDKNSDVPSIESPASTKGIRLSNPEDMSAANEASVSEPKDGEEPKDGENTNAVPFTKHTIIDGSSTKRCRRRRKISSIGDQNDHPNSASILKDDNLNTSLKKTSLESPGARLKKQSEIRKDSAVTHEEPVRNIKVSIKFDGKIVVPPVSIVAKVESEDLCENEEKHKLNSDMKVENSEEGRLSDHVEVNKRRRRTATSNKGFNKSSAMKAHEPQELGNSLVGKRIKIWWPLDKTYYDGVVNAYDHVKGKHKVLYDDGVEEQLNLKKQRWELVDVTVVPDEGKKKRKKKH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00056 755 Pfam Sister chromatid cohesion protein PDS5 protein 32 237 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 348 383 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 407 421 - -
Tsu06g00056 755 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 14 753 IPR039776 GO:0007064
Tsu06g00056 755 PANTHER SISTER CHROMATID COHESION PDS5-LIKE PROTEIN 14 753 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 629 648 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 658 677 - -
Tsu06g00056 755 Gene3D - 683 734 - -
Tsu06g00056 755 Coils Coil 31 51 - -
Tsu06g00056 755 SUPERFAMILY Tudor/PWWP/MBT 684 728 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 331 347 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 325 558 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 427 443 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 460 496 - -
Tsu06g00056 755 MobiDBLite consensus disorder prediction 384 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00056 Tsu-Chr6 438542 443994 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00056 - - mtr:MTR_4g006875 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00056 06 438542 443994 Tsu06g00056 06 438542 443994 ECH