Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00040 ATGGAATTGAGTCAAGAGGAAAAAATCTATTGCTTTATTTTTACTGTAGGGAGGAAATATCCGGGGTTGTTCTTTGTGTATTACTTGTTGTTGTGGGATTTTCCCACAGTAAAATCGCAGCCATTTAATTCAGaaaaccctAGAACGGGAGAGATTTCATTCCCCAAAAATCTCTTCCTTCTATCTTCCCCTCTTTCTCTCCGTTCTCTCTCAACACTTTCCAATTCTTCAATTAATCAATTCCAAttttcaatttccaattttcaagATCTGATTCGCGAAGTGTGGAATGATAATCTTGAAGAAGAGTTCGCTATACTTCGCGAAATCGTCGATGATTATCCTTATATCGCTATGGATACGGAATTCCCCGGAATTGTTCTTCGACCGGTAGGGAATTTCAAGAGTAATTATGATTTTCATTACCAAACCCTAAAAGACAATGTTGATATGCTTAAGCTGATTCAATTGGGTCTTACATTCTCCGATGAACATGGAAATCTTCCAACTTGCGGTGACGATGATGAGAGATTCTGTATTTGGCAATTCAATTTTAGAGAATTCAATGTGAATGAGGATGTTTTTGCAAATGATTCAATTGAACTTTTGAGACAGAGTGGGATTGATTTCAAGAGAAATAACGAAAATGGTATCGATGCTCGGCGTTTCGGTGAGCTTTTAATGTCATCTGGGATTGTTTTGAATGATAATGTTCATTGGGTAACTTTTCATAGTGGATATGATTTTGGTTATTTGTTAAAGCTATTGACTTGTCAAAATTTGCCTGATACACAAGTTGGGTTTTTCAATTTGATCAATATGTATTTCCCAACTGTGTATGATATCAAACATTTAATGAAGTTTTGTAATAGTCTTCATGGAGGGTTGAACAAGCTTGCCGAGTTGTTGGAGGTTGAGAGAGTTGGGATTTGTCATCAAGCTGGTTCGGATAGTTTGCTCACATCTTGTACATTCAGGAAATTGAAAGAGAATTTCTTTAGTGGATCCTTGGAAAAATATGCAGGGGTCTTGTATGGATTAGGTGTTGAGAATGGACAGAGTGCTCATTAA 1071 0.3585 MELSQEEKIYCFIFTVGRKYPGLFFVYYLLLWDFPTVKSQPFNSENPRTGEISFPKNLFLLSSPLSLRSLSTLSNSSINQFQFSISNFQDLIREVWNDNLEEEFAILREIVDDYPYIAMDTEFPGIVLRPVGNFKSNYDFHYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGDDDERFCIWQFNFREFNVNEDVFANDSIELLRQSGIDFKRNNENGIDARRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGVENGQSAH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00040 356 SUPERFAMILY Ribonuclease H-like 92 347 IPR012337 -
Tsu06g00040 356 Pfam CAF1 family ribonuclease 95 218 IPR006941 -
Tsu06g00040 356 Gene3D - 83 351 IPR036397 GO:0003676
Tsu06g00040 356 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 92 355 - -
Tsu06g00040 356 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 92 355 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00040 Tsu-Chr6 354474 356768 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00040 K12581 - gmx:100789409 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00040 06 354474 356768 Tsu06g00040 06 354474 356768 ECH