Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04216 ATGATACACTTTGTGCTGCTCATTAGTCGTCAAGGGAAGGTCAGGCTCACAAAATGGTATTCACCTTACACTCAGAAGGAAAGAAGTAAGGTAATCCGTGAGCTCAGTGGAGTGATTCTTAGCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGACATAAAGTTGTTTATAAAAGGTATGCTAGTCTATATTTCTGTATGTGTATTGATGACACCGACAACGAATTGGAAGTCCTTGAAATGATTCATCATTTTGTGGAGATTCTTGATCGGTATTTTGGCAGTGTCTGTGAACTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTTGATGAACTTCTAATTGCTGGTGAGCTTCAGGAGTCGAGCAAAAAAACTGTTGCCCGGTTGATAGCTGCACAGGATTCATTGGTGGAGACTGCAAAGGAAGAAGCCAGTTCCTTGAGTAATATTATTGCACAAGCCACCAAGATGACAAAAGTAGAAGTGGTGTTTATCCCTTCTCCAGGTTTAGGACATCTGACATCCACCCTCGAGTTTGCTAAACTTCTCATCAACCGTGATAACCGTCTCAGTATAACTGTCTTGGTCATCAAGTTCCCAAACACCGGTGAAACATTAAAAACCATTTCCTCCTCCTTCGACTCAGAAAATCTCCATGTCATCAACCTCCCTGATTGTGCTCATGTTTCCTCCACTTCTGATGTAGGTAACTCTGTGAACACTCTCATTGAAACTCAAAAATCCAACGTTAAAGAAGTTGTTTCCAACATCACTGCAAAAGGAAAACTAGCTGTCTTTGTTGTTGACATGTTTTGCACCACAATGATTGATGTTGCTAATGAATTTGGTGTCCCTTCTCTTGTCTACTTCACTTCCAGTGTTGCTTTCCTTGGTTTGATACTTCATCTTCATACACTTTTGGAAGACAACGCCGAAGCCCTTCGGTTGTCATTGAAGCAGGATGAATTGAACATCCCTTGTTTCGCTAACCCGGTTCCTACAAACACGTTGCCTACTGTGGTGATCCGTAAGGAGTGGGAATCATCTTTTTTCAACTATGGTGGAGGGCTCAAGAAAGCCAATGGCATTATTGTGAATTCGTTTCACGAGCTAGAACCTCATGCGATTAACTCATTCTTGGAAGACCCGAGTCTACGTGGTTTACCGGTATATCCGGTGGGACCTGTATTAAACCTCGACACCAAGCCCAAGGAAACCGTTGATTCTGATAATATCATTAAGTGGCTTGATGATCAACCTCCTTCTTCGGTAGTTTTCCTATGCTTTGGAAGCGTGGGTGCTTTCGATAAGGATCAAGTTAGGGAGATCGCGTGTGCCATTGAGAAATGTGGAACTCGCTTCTTGTGGTCTCTGAGGAAACCCCCACCAAAAGGAACCATGGGTCCGGCGTCCGATTACCCTCTTTCGGATTTGACTGCAGTTTTACCTGAAGGGTTCTTAGATCGAACTGCTGAGATTGGAAAGGTCATTGGATGGGCCCCTCAGGTCCAAGTACTCGCTCATCCAGCCACGGGAGGCTTTGTTTCGCATTGCGGTTGGAATTCTACACTCGAGAGCATACACTATGGTGTGCCTATTGCCACATGGCCACTCTTTGCTGATCAACAAACCAATGCTCTTGAACTCGTCTCTGAGCTTAAGATGGGTGTGGAGATTGCATTGGATTATAGGATGGAGTATGATGTTGGGCGTGACTATCTTTTAACTGCTGACAAGATCGAGAGAGGAATAAGGAATGTGTTGGATAAGAATGGAGAGGTAAGGATGAAAGTGAAAGATATAAGTGAACAAAGTAGGAAAACATCATTACAAGGTGGATCTTCCTACACTTACTTAGGTGGCTTGATTGATTATATTGTAAATCAAGTATGA 1908 0.4313 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGHKVVYKRYASLYFCMCIDDTDNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATKMTKVEVVFIPSPGLGHLTSTLEFAKLLINRDNRLSITVLVIKFPNTGETLKTISSSFDSENLHVINLPDCAHVSSTSDVGNSVNTLIETQKSNVKEVVSNITAKGKLAVFVVDMFCTTMIDVANEFGVPSLVYFTSSVAFLGLILHLHTLLEDNAEALRLSLKQDELNIPCFANPVPTNTLPTVVIRKEWESSFFNYGGGLKKANGIIVNSFHELEPHAINSFLEDPSLRGLPVYPVGPVLNLDTKPKETVDSDNIIKWLDDQPPSSVVFLCFGSVGAFDKDQVREIACAIEKCGTRFLWSLRKPPPKGTMGPASDYPLSDLTAVLPEGFLDRTAEIGKVIGWAPQVQVLAHPATGGFVSHCGWNSTLESIHYGVPIATWPLFADQQTNALELVSELKMGVEIALDYRMEYDVGRDYLLTADKIERGIRNVLDKNGEVRMKVKDISEQSRKTSLQGGSSYTYLGGLIDYIVNQV 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04216 635 Pfam Clathrin adaptor complex small chain 1 140 IPR022775 -
Tsu05g04216 635 SUPERFAMILY SNARE-like 1 139 IPR011012 -
Tsu05g04216 635 Gene3D Glycogen Phosphorylase B; 409 612 - -
Tsu05g04216 635 Gene3D Glycogen Phosphorylase B; 168 624 - -
Tsu05g04216 635 Coils Coil 142 162 - -
Tsu05g04216 635 CDD GT1_Gtf-like 167 611 IPR002213 GO:0008194
Tsu05g04216 635 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 162 632 - -
Tsu05g04216 635 ProSitePatterns UDP-glycosyltransferases signature. 504 547 IPR035595 -
Tsu05g04216 635 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 427 555 IPR002213 GO:0008194
Tsu05g04216 635 Gene3D - 1 157 - -
Tsu05g04216 635 ProSitePatterns Clathrin adaptor complexes small chain signature. 57 67 IPR000804 GO:0006886|GO:0016192|GO:0030117
Tsu05g04216 635 PANTHER UDP-GLYCOSYLTRANSFERASE 71B2 165 632 - -
Tsu05g04216 635 CDD AP1_sigma 3 143 IPR044733 GO:0016192|GO:0030121|GO:0035615
Tsu05g04216 635 PANTHER GLYCOSYLTRANSFERASE 165 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04216 Tsu-Chr5 52668176 52674173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04216 164 635 Glycosyltransferase AT3G21760 44.990 4.44e-139 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04216 - - mtr:MTR_5g090660 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04216 05 52668176 52674173 Tsu05g04216 05 52668176 52674173 ECH