Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04192 ATGAAGAAGCAACTAGCACCACTTGTTCTATTCTCTCTCACAATACTAATCTCACTTATTCATTCCACCACCGCCGGTGCCGCCACCTCCGGCAGCCACAATATCACTCGCATTCTAGCCAAACACCCTGGATTCTCCACCTTCAACCACTACCTATCCATCACTCACCTCGCCGATGAAATCAACCGCCGTCAAACCATCACAATCCTCGCCATCGACAATGCCGCCATGTCCTCCCTCCTCGACAAACACCTCTCCGTCAGCACTCTCAAAAACGTCCTCTCCCTCCATGTCTTAGTCGACTACTTCGGCGCCAAAAAACTCCATCAAATCACCAACGGAACAACTCTTGTTTCCTCCATGTTTCAAGCAACCGGATCCGCCGCCGGAACTGCCGGTTACGTCAATGTAACAAATCTCAAAGGCGGTAAAGTTGGTTTCGCCGCCGAAGACAACGACGGATTACACTCATTCTACGTAAAATCAATTGAAGAACTTCCTTACGTCATCTCCGTTCTTGAAATCAGTCAACCTTTAAGCTCCGCCGACGCAGAAGCACCAACGGCAGCGCCAAGCGATATCGATTTAATCGCAATTATGTCTAAACAAGGTTGCAAAGCTTTCGCTGATTTGTTACGCGTTTCAAAAGCACTTCCAACTTTCAAAGAAACCGTAGACGGAGGTTTAACCGTTTTCTGTCCAACTGACAGCGCCGTTAGCGGTTTttcaacaaaatacaaaaacctAACAGATGCTAAAAAAGTTTCACTTCTGTTATATCACGGTGTTCCCGTTTATCAATCATTACAAATGTTGAAATCAAATAACGGAATTATGAATACTTTAGCAACAGAAGGTGCTAACAAATACGATTTCACAGTTCAAAATGACGGTGAAGATGTTAACCTTGAAACAAAAGTTAACACTGCGAATATCATCGGAACTTTGATAGATCAAGATCCATTTGTGGTTTATAAgattgataaagttttgatgccAAGAGAATTGTTTAAGGGAGTGAAAGAAGATTTAGCACCTGCTGAATCACCTAAAGcaccgaagaagaagaagacaacaACAAAGAAAGGTAAGGCACCGGCGGCCGATGAAGATGCTGATTCACCGGCGGATGGACCAGATGCAGATGCAGATTCCGATGATGAGAAAGCTGCTGATGATAATGGAGTCAGTGGATTAAATCAAGGGTTCAGATTCGTTATGAAGGCGCTGGGTAGCATGGGAAAGGGTGGAAGGTCTCCCACGGTGGGAAACCACCCTTTACCCTTAGATCATGAAGGTTTATCATAA 1308 0.4281 MKKQLAPLVLFSLTILISLIHSTTAGAATSGSHNITRILAKHPGFSTFNHYLSITHLADEINRRQTITILAIDNAAMSSLLDKHLSVSTLKNVLSLHVLVDYFGAKKLHQITNGTTLVSSMFQATGSAAGTAGYVNVTNLKGGKVGFAAEDNDGLHSFYVKSIEELPYVISVLEISQPLSSADAEAPTAAPSDIDLIAIMSKQGCKAFADLLRVSKALPTFKETVDGGLTVFCPTDSAVSGFSTKYKNLTDAKKVSLLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQNDGEDVNLETKVNTANIIGTLIDQDPFVVYKIDKVLMPRELFKGVKEDLAPAESPKAPKKKKTTTKKGKAPAADEDADSPADGPDADADSDDEKAADDNGVSGLNQGFRFVMKALGSMGKGGRSPTVGNHPLPLDHEGLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04192 435 SUPERFAMILY FAS1 domain 189 334 IPR036378 -
Tsu05g04192 435 SMART fasc_3 68 170 IPR000782 -
Tsu05g04192 435 SMART fasc_3 230 334 IPR000782 -
Tsu05g04192 435 MobiDBLite consensus disorder prediction 411 435 - -
Tsu05g04192 435 ProSiteProfiles FAS1/BIgH3 domain profile. 32 198 IPR000782 -
Tsu05g04192 435 SUPERFAMILY FAS1 domain 38 151 IPR036378 -
Tsu05g04192 435 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 403 IPR033254 -
Tsu05g04192 435 Gene3D FAS1 domain 196 333 IPR036378 -
Tsu05g04192 435 Gene3D FAS1 domain 32 162 IPR036378 -
Tsu05g04192 435 MobiDBLite consensus disorder prediction 373 389 - -
Tsu05g04192 435 MobiDBLite consensus disorder prediction 343 399 - -
Tsu05g04192 435 ProSiteProfiles FAS1/BIgH3 domain profile. 192 331 IPR000782 -
Tsu05g04192 435 Pfam Fasciclin domain 205 333 IPR000782 -
Tsu05g04192 435 Pfam Fasciclin domain 44 120 IPR000782 -
Tsu05g04192 435 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 12 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04192 Tsu-Chr5 52530541 52532619 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04192 - - gmx:100799605 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04192 05 52530541 52532619 Tsu05g04192 05 52530541 52532619 ECH