Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04112 atgactGTGGGAGCAGGAATTACTGTTGCTGATGGAAACTTAATGGTTTTGGGGAAGAAAGTCCTGAGTAATGTTCATGATAATGTTCTTGTTACTCCTCCATCTGGTGGTTCATTGCTCAATGGTGCATTCATTGGTGTTGAATCTCATCAAAAGGGTAGCCGCAGAGTTTTTCCTATTGGCAAACTTGAGGGTTTAAGGTTTATGAGTCTTTTCCGGTTCAAGATGTGGTGGATGACACAAAGAATGGGTACTCGTGGACAAGAAATTCCCATTGAGACACAATTCTTGCTGATTGAAGCACACAATGGTTGTGATATTGATGGAGAAGATGACCAAGATGGTTCTACCTATGCGGTTTTGTTGCCTCTTTTGGAAGGAGATTTTAGGGCAGTTCTTCAAGGGAATGATCAAAATGAAATCGAGATTTGTGTGGAAAGTGGATGTCCTGATGTGGAGGAATTTGATGGGACTCATTTGGTGTTTATTGGGGCTGGATCAGATCCTTATGAAGTTATAACAAATGCTGTCAAGACTGTTGAGAAACACTTGAAGACGTTCTGTCACCGTGAGCGAAAGAAGATGCCAGATATGCTTAACTGGTTTGGTTGGTGTACATGGGATGCTTTCTATACCAATGTCACATCAGAGAATGTGAAGCAAGGACTACAAAGttttgagGAAGGTGGAATTCCTGCTAAGTTTGTTATAATTGACGACGGATGGCAATCGGTTAGCATGGACCCCAACGGTATCGAATGGAAAGCTGATTGTGCGGCAAACTTTGCGAATCGCTTAACTCATATCAAAGAAAATCACAAGTTCCAGAAAGACGGCAAGGAAGGTCACCGGATAGAGGACCCTGCCACGGGACTTCATCATATTACCAATGaaataaaagaagaacatgCCATAAAGCATGTGTACGTTTGGCATGCGATTACAGGATATTGGGGAGGTGTTAAACCCGATGTTAGTGGCATGGAACACTATGAGTCAAAGATGACATTCCCTATCTCATCTCCTGGAGTCAAGTCCAATCAACCAGATGAAGCTTTAGATACCATTGCAATTAATGGACTTGGCCTTGTGAATCCCGAGAAAGTTTATCACTTTTACGATGAACTCCACTCATATCTAGCATCTGCTGGTATCGACGGTGTCAAAGTTGATGTTCAGAACATCCTTGAAACTCTTGGAGCAGGGCATGGTGGGAGAGTGAAACTTGCAAGGAAATATCATCAGGCCTTGGAGGCATCAATCTCTAGGAACTTTCCTGATAATGGAATCATTTGTTGCATGAGTCACAACACAGACGGATTGTATAGTTCAAAGCGTTCGGCTGTTATTAGAGCATCTGATGATTTCTGGCCGAGAGACCCTGCATCACACACGATTCACATTGCGTCAGTTGCATACAATACTATTTTCCTTGGTGAATTTATGCAGCCAGATTGGGACATGTTTCATAGTCTACATCCAATGGCTGAATATCATGCTGCTGCAAGAGCAGTTGGAGGATGTCCTATTTATGTCAGTGACAAGCCTGGACACCACGACTTTAATCTTTTGAAGAAGCTTGTACTTCCCGATGGTTCTATATTACGAGCTAAACTTCCAGGAAGACCAACCAAAGATTGCTTATTTGCCGATCCTGCTAGAGATGGAAAGAGTCTTCTAAAGATATGGAACATGAATGACTATTCTGGAGTTGTTGGTGTATTCAATTGCCAAGGAGCTGGGTGGTGCAAAGTTGGAAAGAAGAATCTTATCCATGACGAGAATCCAGGCACAGTCACCGGCATCATTAGGGCTAAAGATATCGACTATTTATCCACAGTTGCAGATGATAAATGGACAGGAGACACTGTTATATTTTCCCATCTTTCTGGTATGCTTTAA 1902 0.4185 MTVGAGITVADGNLMVLGKKVLSNVHDNVLVTPPSGGSLLNGAFIGVESHQKGSRRVFPIGKLEGLRFMSLFRFKMWWMTQRMGTRGQEIPIETQFLLIEAHNGCDIDGEDDQDGSTYAVLLPLLEGDFRAVLQGNDQNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYEVITNAVKTVEKHLKTFCHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKQGLQSFEEGGIPAKFVIIDDGWQSVSMDPNGIEWKADCAANFANRLTHIKENHKFQKDGKEGHRIEDPATGLHHITNEIKEEHAIKHVYVWHAITGYWGGVKPDVSGMEHYESKMTFPISSPGVKSNQPDEALDTIAINGLGLVNPEKVYHFYDELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISRNFPDNGIICCMSHNTDGLYSSKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCPIYVSDKPGHHDFNLLKKLVLPDGSILRAKLPGRPTKDCLFADPARDGKSLLKIWNMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVTGIIRAKDIDYLSTVADDKWTGDTVIFSHLSGML 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04112 633 SUPERFAMILY (Trans)glycosidases 196 527 IPR017853 -
Tsu05g04112 633 PANTHER - 1 631 IPR008811 -
Tsu05g04112 633 Pfam Raffinose synthase or seed imbibition protein Sip1 8 631 IPR008811 -
Tsu05g04112 633 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED 1 631 - -
Tsu05g04112 633 Gene3D Aldolase class I 198 527 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04112 Tsu-Chr5 51802600 51807378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04112 1 633 Glycoside Hydrolase AT1G55740 73.934 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04112 K06617 - gmx:100785506 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04112 05 51802600 51807378 Tsu05g04112 05 51802600 51807378 ECH