Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04080 atgaattCTAGGTGTTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCAGAAAGAGGAGATAGAGATGGTAGTTCTAGAAATATGCCTCAACTTGTCTCGTCACCGCCAACGTTTTCGGTTCGGATGGCGATGAGAATATCTAGATCAAAATGGTTTACTTTGTTGAGAAGAATTTTTCATTATCAAAATGGATCAAGGTCTAATCTTGGCTCGAACCCTTTCAATTCTAGTACTTGGTTGATGTTGGAATTTATTGTTTTGATTGTACAAATAATCATTTCGACATTCATTTTGGCTATTTCAATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATTTCTGGTTATGATATTGGATGTGTTCTTAATTTGCTTATGGTTTATGGCCGCTATCGACAAATTTATCTGATTCAAGGAGATGCTCTTAGTCTTTCTGATATGGAACAGCAGAGAAATAATGAAGAAATAAGGATGCCACACTTGATGAACAAATGCAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTTCTGTTATGCTGTTGTGTGCCACTGATCAGCACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCAACTGATGAACAAGTTTCACTACTTCCAAGTTGGATACATAAAGAACCTCATACCAAGTTAGAGTCTGCCGATGACTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATCTGCTTAGCAAAGTACAAAGACAAAGAAGAACTTAGACAATTGCCATCATTGATTTGGTTCCAAGTTGTACCCTCATCTGTCATCacatcattcatcatcatcatcactttcgCCACCTTCACTCACTCGATTCCATTCTCTGCAACCACCGTTAACAACACAACCCTTCTCTTCTTCACCAAAAACCCCTTTCCCAATTCCCCTAATAATCTTCAAAAATCTCTTTTTTCCTCTGATCCTTTACCTTCAAGATTCTGTTGCTGTTGGTGCCTTCGAGTTTTGCAGATCCCGGCATTTGGGATTGGCCAGCTGAAATTGGAAATGGTTAAAAGTTATGGAACAACAGGTCTTGACGATCCTGAAATCCTCGCAAGGGAGACAGTGTTTAGTGTAAGTGAAATTGAAGCACTTTATGAGCTCTTTAAAAAGATCAGTAGTGCTGTGATTGATGATGGGCTGATCAACAAGGAAGAGTTTCAATTGGCATTATTCAAgactaataaaaaagaaagtttgTTTGCTGATCGGGTATTTGATTTGTTTGACACAAAGCACAATGGGATACTTGGTTTTGAAGAGTTTGCTCGTGCCCTCTCCGTTTTCCACCCAAATGCCCCTATTGATGAAAAGATTGAATTTTCCTTTCAATTGTATGATCTCAAGCAGCAGGGTTTTATCGAAAGGCAAGAGGTGAAGCAAATGGTAGTTGCTACACTTGCTGAATCTGGAATGAATCTATCAGATGATGTTATAGAGAGTATAATTGACAAGACATTTGAGGAAGCTGATACAAAGCATGATGGCAAGATTGACAAGGAGGAATGGAGAAACCTTGTTTTGCGCCATCCATCACTTCTGAAGAACATGACCCTTCAATATCTAAGGGATATCACCACAACATTCCCAAGCTTTGTATTCCATTCACAAGTAGACGATACTTGA 1821 0.38 MNSRCLLNSNSIVQSSSSYAERGDRDGSSRNMPQLVSSPPTFSVRMAMRISRSKWFTLLRRIFHYQNGSRSNLGSNPFNSSTWLMLEFIVLIVQIIISTFILAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDALSLSDMEQQRNNEEIRMPHLMNKCRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMASSNKGATDEQVSLLPSWIHKEPHTKLESADDSESIENFINEDPECCICLAKYKDKEELRQLPSLIWFQVVPSSVITSFIIIITFATFTHSIPFSATTVNNTTLLFFTKNPFPNSPNNLQKSLFSSDPLPSRFCCCWCLRVLQIPAFGIGQLKLEMVKSYGTTGLDDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDEKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLRDITTTFPSFVFHSQVDDT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04080 606 ProSiteProfiles EF-hand calcium-binding domain profile. 543 578 IPR002048 GO:0005509
Tsu05g04080 606 MobiDBLite consensus disorder prediction 16 37 - -
Tsu05g04080 606 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 20 320 - -
Tsu05g04080 606 Pfam EF-hand domain pair 444 489 IPR002048 GO:0005509
Tsu05g04080 606 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 320 - -
Tsu05g04080 606 Pfam EF-hand domain pair 501 570 IPR002048 GO:0005509
Tsu05g04080 606 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Tsu05g04080 606 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Tsu05g04080 606 Gene3D - 412 606 - -
Tsu05g04080 606 SUPERFAMILY EF-hand 413 598 IPR011992 -
Tsu05g04080 606 SMART efh_1 547 575 IPR002048 GO:0005509
Tsu05g04080 606 SMART efh_1 503 531 IPR002048 GO:0005509
Tsu05g04080 606 SMART efh_1 466 494 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04080 Tsu-Chr5 51608056 51617557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04080 394 606 EF-hand Containing Proteins AT5G55990 89.671 6.09e-133 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04080 - - gmx:100813670 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04080 05 51608056 51617557 Tsu05g04080 05 51608056 51617557 ECH