Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04042 ATGGCGAAAGTTGTGTACATGTCTTTACCTTTCCTCTCAGAACTCCACAAAACCAcaacttcttcatcttcatcatcttcttcaaaacCATTGAAGCTTCCCCATAGAACACGCACCACCAATATATCCATTTCCTCATCTACCAACGGTTCTGCAAACCGTTCTGTTAAACCCCAGAAGTTTAATTCAGATATTTCACCTCACAGAGCTGTGTCAGCTGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCTGATCTTCTCAATGAGAAAGGAAAAGGTTCTGGTGAAAATGAGATGGGTTATGTTCAAAGAACACTTGGATTTCGCACTCGAGAGTTAAATAATCAAGACCTTAGATTGGTTACCGACATTGTTGGGGGAGCAATTCGTTGGAGGAGATACCTTGATCATTTAATCAGTTCACTGTGtcatataaaagatatatatagtATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCGTCTTTGAGATTGTGAAATTAGACATGCCACCTTATGCTGTTGTAGATGAGAACGTGCAGCTTGCAAAAGCTGCTCTCAGGCCGGGTGCTGGCAACATGGTCAATGGAATCCTACGAAAACTAGTTGTGCTTAAGGAAAAGGAAATGCTTCCTTTGCCCAAAGTGGAGGGCAATGATCGTTCTCAAGCACGTGCTCTGGCAACTCTCTACTCACATCCAGTTTGGATCGTGAGGAGATGGACGAAGTATCTTGGACAGGAAGAAaccattaaattgatgatatggAACAATAGTGAACCAAGTTTTAGCTTAAGaGCAAACCGGGCAATAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGAATTGAAGGTCCCACACAAGCTTTCATTGCATTTGGATGACTTTGTTCGCATCAAAACTGGGTTGCAGACTATCATTCACGCCGGCCTACTCAAAAAGGGTTTATGTTCTGTTCAGGATGAGAGTGCAGGTCTGGTTGTTTCTATTGTGGATCCTCAACCCGGTGATACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGACAAGGTATGGTATATGCAGTTGATATAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCACCGTCCATGCCGATCTTCGTATATTAACTGACGGTGAACCACTTAAGAGTAACAAAGTTTTATTGGATGCACCATGCTCAGGACTTGGTGTTCTTTCAAAGCGAGCGGACTTACGGTGGAACAGGGATCTAGCGGATATGGAACAACTGAAAAACTTACAGGATGAGCTCCTTGACGCAGCATCCACATTGGTAAAACCCGGGGGAGTATTAGTTTATAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCCGCATTTCTAGTAAGACATCCGGATTTTCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTTGTGACGCCAAATGGTTTCTATTTCTCCAACCCGGTAAAACATTCACTGGACGGCTCCTTTGCAGCTCGTTTAATACGCGCTGTATAA 1602 0.4151 MAKVVYMSLPFLSELHKTTTSSSSSSSSKPLKLPHRTRTTNISISSSTNGSANRSVKPQKFNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTDIVGGAIRWRRYLDHLISSLCHIKDIYSMEPLLLQILRIGVFEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGILRKLVVLKEKEMLPLPKVEGNDRSQARALATLYSHPVWIVRRWTKYLGQEETIKLMIWNNSEPSFSLRANRAIGFSRDDLVTQLNELKVPHKLSLHLDDFVRIKTGLQTIIHAGLLKKGLCSVQDESAGLVVSIVDPQPGDTIVDCCAAPGGKTLYMASHLSGQGMVYAVDINSGRLRILKETAKLHQVDGVVTTVHADLRILTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRDLADMEQLKNLQDELLDAASTLVKPGGVLVYSTCSIDPEENDERVAAFLVRHPDFHIDPVDRYVPPDFVTPNGFYFSNPVKHSLDGSFAARLIRAV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04042 533 Gene3D Vaccinia Virus protein VP39 330 533 IPR029063 -
Tsu05g04042 533 PRINTS RNA (C5-cytosine) methyltransferase signature 316 330 IPR023267 GO:0001510
Tsu05g04042 533 PRINTS RNA (C5-cytosine) methyltransferase signature 514 531 IPR023267 GO:0001510
Tsu05g04042 533 PRINTS RNA (C5-cytosine) methyltransferase signature 345 355 IPR023267 GO:0001510
Tsu05g04042 533 PRINTS RNA (C5-cytosine) methyltransferase signature 463 479 IPR023267 GO:0001510
Tsu05g04042 533 PRINTS RNA (C5-cytosine) methyltransferase signature 413 425 IPR023267 GO:0001510
Tsu05g04042 533 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 110 531 IPR004573 GO:0006364|GO:0008649
Tsu05g04042 533 Gene3D Sun protein; domain 3 223 329 - -
Tsu05g04042 533 SUPERFAMILY NusB-like 105 240 IPR035926 -
Tsu05g04042 533 Pfam 16S rRNA methyltransferase RsmB/F 335 529 IPR001678 GO:0008168
Tsu05g04042 533 Gene3D - 85 219 IPR035926 -
Tsu05g04042 533 PRINTS Viridiplantae FMU-related RCMT signature 213 226 IPR023268 -
Tsu05g04042 533 PRINTS Viridiplantae FMU-related RCMT signature 74 97 IPR023268 -
Tsu05g04042 533 PRINTS Viridiplantae FMU-related RCMT signature 98 114 IPR023268 -
Tsu05g04042 533 PRINTS Viridiplantae FMU-related RCMT signature 490 502 IPR023268 -
Tsu05g04042 533 MobiDBLite consensus disorder prediction 17 62 - -
Tsu05g04042 533 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 25 532 IPR023267 GO:0001510
Tsu05g04042 533 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 25 532 - -
Tsu05g04042 533 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 227 531 IPR029063 -
Tsu05g04042 533 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 256 532 IPR001678 GO:0008168
Tsu05g04042 533 CDD AdoMet_MTases 343 469 - -
Tsu05g04042 533 Pfam NusB family 100 206 IPR006027 GO:0003723|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04042 Tsu-Chr5 51210792 51215711 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04042 K03500 - gmx:100779327 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04042 05 51210792 51215711 Tsu05g04042 05 51210792 51215711 ECH