Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04039 ATGTTTTCAAGTAAAGGAGTGGGTGTTAATAAGAAAATAGTTAAGTCTCTAAAATTGTTCTTGGTTTCTATAGCAACGAGTGGTATTCAAACCATTACTGCTCCTGGAGAGAAACGAGAGGCATTACGCTGTGAAGGTGGAGGGGGTCATCAATTAGAAGCGGCATTTGTGTGTAAGGGTTTTAAGTGGCAACTTCAACAAGTTTTGTTCACTGCTGATGTGATTGTGTTACCCTTGGGATGCTGTGATTTGATTTTGGGCATTCAATGGTTGAAATCCTTAGGCCCTATTCTATGGGACTTTGATAAATTGCAGATGGAATTCACCACTCATGGCAAGAAGTTTGTATTGCGCGGGGCTAAGGTTCCTGGGTTCAAGCTTATTAACAACAAATCATTTGCACAAGCTGTGCAAAAGGGTGCGGAGCTGTGTTTCCTCTCCATTTCACATGATGCACCTTGCTTGACCTTTCCTACTTTCCATGTCATGCAAACACCAGAACTGCAGTCTCCTTTACACCCTGCCATTGCTGATTTaattttgaagtttgaagaCATATTCAAAGAACCTAGGCAGTTACCACCACCTCGTCCTGGGTTTGATCACCGTATTCCATTAAAAGAAGGTGCGGAGCCATTCAATTTACGTCCCTATCGTTTTTCTCTCATTCAGAAGGATATCATTGATAAATTGGTACAAGACATGTTAGATCAAGCGGATCCTCTACCGTCGAGCTTCGTCAGCTTTGCAGCGGCGGTCATGGATGTTCGATTGCCGTTAGATAAATTAGCTTTAAAACTTATCAGTAGTAATGATCCCTCTCCTGAAAACACAAGCAATGGCAGGATATATGTTGTTCTGGTAGCAACTGGAAGCTTCAATCCGCCTACTTTTATGCATTTACGCATGTTCGAGCTTGCAAGAGATGCATTGAATTCCAAAGGTTACTGTGTAATTGGAGGATACATGTCACCTGTGAATGATGCATACAAGAAAAAGAACCTAATATCTGCTGACCATCGAATACAATTATGTCATCTAGCCTGCAGAAGTTCAGAATTTGTAATGGTTGATCCATGGGAGGCAAATCAAAGCACATATCAACGCACTTTAACTGTCCTGTCAAGAGTCCACACTTCTATTTGTGAGACAGGGTTGGTATCTAGAGAATCCCTCAAGGTCATGCTTGTTTGTGGTTCTGATCTCCTTCATTCCTTTAGCATTCCTGGATTCTGGATTCCCAAACAGgTTAAGAGTATATGCAGAGATTATGGAGTAGTCTGCATTCGCAGAGAAGGACAAGATGTTGAGAAGACTATATCTGAtgataatattttgaatgagAATCAGGCTAATATCGAAGTTGTAGACGAACTTGTGCCAAATCAAATCAGCTCAACAAGAGTAAGGGAATGCATTGCAAGAGGATTATCAATAAAATACCTTACTGCAGATGAAGTGATTGATTATATCAGAGAACATAAGTTATACTTGAAATCAGATGATAAATAA 1512 0.3975 MFSSKGVGVNKKIVKSLKLFLVSIATSGIQTITAPGEKREALRCEGGGGHQLEAAFVCKGFKWQLQQVLFTADVIVLPLGCCDLILGIQWLKSLGPILWDFDKLQMEFTTHGKKFVLRGAKVPGFKLINNKSFAQAVQKGAELCFLSISHDAPCLTFPTFHVMQTPELQSPLHPAIADLILKFEDIFKEPRQLPPPRPGFDHRIPLKEGAEPFNLRPYRFSLIQKDIIDKLVQDMLDQADPLPSSFVSFAAAVMDVRLPLDKLALKLISSNDPSPENTSNGRIYVVLVATGSFNPPTFMHLRMFELARDALNSKGYCVIGGYMSPVNDAYKKKNLISADHRIQLCHLACRSSEFVMVDPWEANQSTYQRTLTVLSRVHTSICETGLVSRESLKVMLVCGSDLLHSFSIPGFWIPKQVKSICRDYGVVCIRREGQDVEKTISDDNILNENQANIEVVDELVPNQISSTRVRECIARGLSIKYLTADEVIDYIREHKLYLKSDDK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04039 503 Gene3D HUPs 282 503 IPR014729 -
Tsu05g04039 503 CDD NMNAT_Eukarya 285 497 IPR045094 GO:0000309|GO:0004515|GO:0009435
Tsu05g04039 503 TIGRFAM TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 289 497 IPR005248 GO:0009435|GO:0016779
Tsu05g04039 503 PANTHER NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE 273 498 - -
Tsu05g04039 503 SUPERFAMILY DNA/RNA polymerases 179 239 IPR043502 -
Tsu05g04039 503 SUPERFAMILY Nucleotidylyl transferase 285 500 - -
Tsu05g04039 503 CDD retropepsin_like 45 92 - -
Tsu05g04039 503 Pfam Cytidylyltransferase-like 288 471 IPR004821 GO:0003824|GO:0009058
Tsu05g04039 503 PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE 273 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04039 Tsu-Chr5 51193651 51204903 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04039 K06210 - gmx:100793809 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04039 05 51193651 51204903 Tsu05g04039 05 51193651 51204903 ECH