Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04027 ATGGCGCCTGAGGCAGCGAGAAACGCAGGCGCTATCGGAACCGCCATTTTCTTCTCACTCGCCGTCGCATATGTCTTCTGCGACCGTCGAAACAATTCATCAAAGaacaacaagaagaaaaaaccaAAGAATGGAATCATCGACGCCATTGGTAACACTCCTTTGATTCGAATCAATAGTCTCTCCGATGCCACTGGTTGcgaaATTCTTGGAAAGTGTGAGTTTTTGAATCCTGGAGGAAGTGTTAAAGATCGTGTTGCAGTTCGAATTATTGAAGAGGCTTTGGAATCTGGGCAGCTACGTCCGGGTGGAATAGTTACTGAAGGGAGTGCCGGAAGCACTGCCATTAGCATTGCTACTGTTGCTCCTGCTTATGGATGTAAATGCCATGTGGTTATTCCAGATGATGCTGCCATTGAGAagTCTCAAATAATTGAAGCCCTTGGGGCAACTGTTGAAAGAGTACGGCCGGTGTCAATCACTCATAAAGACCATTTCGTCAATATTGCAAGAAGACGGGCAGCTGAAGCAAATGAGTTTGCATTAAAGCATAAAAAATCACAACCTAATGGCACAGACATACAGCAAATAAATGGTTATAAATCTGACGAAGACAACCACAGCTCACTCTTTCCTAATGATTGCCAAGGAGGCTTCTTTGCTGATCAGTTTGAGAACCTAGCAAACTTTAGGGCCCATTACGAGGGTACAGGACCTGAGATTTGGGAACAGACAGAAGGAAAATTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGTACTGTTGCTGGTGTTTCCAAGTTTCTTCAGGAAAAGAATCCAAACATCAAGTGTTACCTCATAGATCCTCCTGGTTCTGGCTTGTTTAATAAGGTAACGAGGGGAGTTATGTACACGAAAGAGGAGGCAGAAGGACGGAGACTTAAGAATCCATTCGACACTGTAACAGAAGGAATCGGAGTTAACAGGGTAACAAGGAATTTTGCAGAGGCAAAACTTGATGGGGCATATAGAGGTAGAGATATGGAGGCTGTTGAAATGGCCAGGTTTCTTGTGAAGAACGACGGGCTCTTCCTTGGGAGCTCTTCTGCAATGAACTGTGTTGGAGCAGTTAGAATAGCGCAATCACTTGGCCCTGGTCACACAATTGTAACCATTCTTTGCGACAACGGAATGAGACATCTGAGCAAGTTTCATAATGCTGAATACTTGTCTCAGCTTGGTTTGACACCGAAAGCAACTGGATTAGAATTCTTGGGTATCGAATGA 1269 0.4381 MAPEAARNAGAIGTAIFFSLAVAYVFCDRRNNSSKNNKKKKPKNGIIDAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVRIIEEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNIARRRAAEANEFALKHKKSQPNGTDIQQINGYKSDEDNHSSLFPNDCQGGFFADQFENLANFRAHYEGTGPEIWEQTEGKLDAFVAAAGTGGTVAGVSKFLQEKNPNIKCYLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTVTEGIGVNRVTRNFAEAKLDGAYRGRDMEAVEMARFLVKNDGLFLGSSSAMNCVGAVRIAQSLGPGHTIVTILCDNGMRHLSKFHNAEYLSQLGLTPKATGLEFLGIE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04027 422 Pfam Pyridoxal-phosphate dependent enzyme 48 389 IPR001926 -
Tsu05g04027 422 PANTHER CYSTEINE SYNTHASE-RELATED 30 420 - -
Tsu05g04027 422 Gene3D - 80 181 IPR036052 -
Tsu05g04027 422 Gene3D - 216 230 IPR036052 -
Tsu05g04027 422 PANTHER CYSTATHIONINE BETA-SYNTHASE 30 420 - -
Tsu05g04027 422 CDD CBS_like 51 396 - -
Tsu05g04027 422 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 72 90 IPR001216 GO:0006535
Tsu05g04027 422 Gene3D - 50 79 IPR036052 -
Tsu05g04027 422 Gene3D - 231 395 IPR036052 -
Tsu05g04027 422 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 41 403 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04027 Tsu-Chr5 51124745 51128360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04027 43 396 Miscellaneous Gene Families AT3G04940 28.090 2.29e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04027 K01738 - gmx:100799081 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04027 05 51124745 51128360 Tsu05g04027 05 51124745 51128360 ECH