Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04013 ATGTTGAGGGTTCAGTTGTATTTTGGTGATGGGGTGTTGATAGGCACCGGAACTTGTATTTTGGGGAATATTAAGATTGGTGATGGCGCGAAAATTGGTGCTGGTTCAGTTGTGATTAAGGAAGTTCCTCCTAGGACAACGGTCGTTGGGAATCCGGCTAAATTGGTTGGAGGGAAGAACAATCCTATTAAACTTGACAAGATTCCTAGTCACACTATGGATCATATTGCACCATCCACTATTGAGGCTTGA 252 0.4325 MLRVQLYFGDGVLIGTGTCILGNIKIGDGAKIGAGSVVIKEVPPRTTVVGNPAKLVGGKNNPIKLDKIPSHTMDHIAPSTIEA 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04013 83 Pfam Bacterial transferase hexapeptide (six repeats) 9 39 IPR001451 -
Tsu05g04013 83 PANTHER SERINE ACETYLTRANSFERASE 8 77 - -
Tsu05g04013 83 PANTHER SERINE ACETYLTRANSFERASE 8 77 - -
Tsu05g04013 83 SUPERFAMILY Trimeric LpxA-like enzymes 9 57 IPR011004 -
Tsu05g04013 83 Gene3D Hexapeptide repeat proteins 6 82 - -
Tsu05g04013 83 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 14 42 IPR018357 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04013 Tsu-Chr5 51046767 51047018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04013 9 77 Miscellaneous Gene Families AT2G17640 46.377 1.76e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04013 K00640 - gmx:100820316 122.864
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04013 05 51046767 51047018 Tsu05g04013 05 51046767 51047018 ECH