Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03990 ATGCACATTTTAAAGGTCCGTGAGTTGGCTGAAAAAGAATCTGAAAATGGTGTCTTCAGACTACTCAGAAGTGATGTTACTCGATTCCTCACAACCATACTTATTGGCACAACTGTAGTAAATATTGCAGCAACTGCTCTGGTCACAGAAGCTGCAACTGCAGTATTTGGCGAAGCTGGTGTTAGTGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGTATTGCTGTTCATAATGCCACAGAGGTGGCTCGGTTTGTGGTCAGGCCAGTGGCATGGCTTTCTCTGGTACTGTATCCCGTAGGAAGAATTGTTACCTATCTTTCAATGGGGATGCTTAAATTGCTTGGCTTAAAAGGAAGTAGTGAGCCATATGTTACTGAAGAGGAGCTAAAACTGATGCTAAGGGGTGCAGAACTAAGCGGGGCaattgaagaggaagaacaGGATATGATTGAAAATGTGTTGGAGATAAAAGACACACATGTCAGAGAGGTTATGACACctcttgttgatgttgttgcAATCGATGCAAGTGCAAGCCTTGTAGATTTTCATCACTTGTGGGTCACACATCAATACTCAAGGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGCGAGACGCTGGAGAGTATTACGGTTGGAGATATGGCTCACAAGCCTGCATATTTTGTACCTGATTCAATGTCTGTTTGGAATCTCCTTAGAGAGTTTCGAATCAGAAAGGTTCACATGGCTGTCGTTCTTAATGAGTATGGTGGAACTGTTGGACTTGTAACTCTTGAAGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGaagaaatacaaaagaaaaCTGGCTACATTGTGATGCGAGCTGAGGGTGTGTTTGACGTGGATGCTAACACATCCATTGATCAACTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCATCAATATGAGACGGTATCTGGCTTTGTATGCGAAGCCTTTGGATACATTCCAAGGACAGGTGAGAGCATCAAGATAGATCTTGAAAGGGATgacgaagatgatgaagatgacaCCAATGGCGACCACCAGGAACCGAAagagaaaaaacatattttcaaacttgagATACTAGCAGGAAATGCAAGAAAGGTGAGTGCTGTTCGGTTTGAAAGGCTAATAAATAATGGCGACGAAACGTTGGAGACTAAAGAAGTAACACGGATGTTCCCGAAAATTGTGAAAAGAAAATGGAACAGCGGCGAAGAGTCTGAGTCTGAGGATGATGGAGAATATGATGGATATGCATTTGTAAAGAGACCACAAGAAGACATTTCTAATGAATATGTAGTTGATCAAGAAAATTCTCTTAGAAATTCATAA 1455 0.389 MHILKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIAATALVTEAATAVFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGSSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASASLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGETLESITVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKIDLERDDEDDEDDTNGDHQEPKEKKHIFKLEILAGNARKVSAVRFERLINNGDETLETKEVTRMFPKIVKRKWNSGEESESEDDGEYDGYAFVKRPQEDISNEYVVDQENSLRNS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03990 484 MobiDBLite consensus disorder prediction 369 392 - -
Tsu05g03990 484 CDD CBS_pair_CorC_HlyC_assoc 170 291 IPR044751 -
Tsu05g03990 484 ProSiteProfiles CBS domain profile. 175 234 IPR000644 -
Tsu05g03990 484 ProSiteProfiles CBS domain profile. 242 300 IPR000644 -
Tsu05g03990 484 SUPERFAMILY FAD-binding/transporter-associated domain-like 313 424 IPR036318 GO:0050660
Tsu05g03990 484 Pfam Cyclin M transmembrane N-terminal domain 4 156 IPR002550 -
Tsu05g03990 484 Pfam CBS domain 171 229 IPR000644 -
Tsu05g03990 484 Pfam CBS domain 239 294 IPR000644 -
Tsu05g03990 484 SMART CorC_HlyC_2 315 418 IPR005170 -
Tsu05g03990 484 ProSiteProfiles CNNM transmembrane domain profile. 1 156 IPR002550 -
Tsu05g03990 484 Pfam Transporter associated domain 316 416 IPR005170 -
Tsu05g03990 484 MobiDBLite consensus disorder prediction 442 484 - -
Tsu05g03990 484 PANTHER BNAC03G73630D PROTEIN 4 453 - -
Tsu05g03990 484 Gene3D - 312 414 IPR016169 -
Tsu05g03990 484 PANTHER HEMOLYSIN-RELATED 4 453 - -
Tsu05g03990 484 SUPERFAMILY CBS-domain pair 158 297 IPR046342 -
Tsu05g03990 484 Gene3D - 150 305 IPR046342 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03990 - - mtr:MTR_5g094740 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03990 05 50856153 50860666 Tsu05g03990 05 50856153 50860666 ECH