Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03986 ATGGATATATCAGACTATACAAGAattgtatttgataaaattCAGAAATTCGAGCCCGAGAATGCTACAAAGATAATGGGCTATCTCCTTTTGCAAGACCATGGTGAACAAGAATTGGCTAGATTGGCTTCTTGTCCTGATCACTTCATCGGTGAAGTTGTCTTTAAGGCGAAAACTGATCTTCAAATGTTAGCTGTTAATCCAACCATGATGCCAATTTCACCACCTAATGTTAACCCTCAACAAGGTTTAAGCCATTTTCCGGGTTTATCTTCGTCTTCACCACCAAACTTTCAGCTCCCGTCTCCCTATTGGAATCAACAGTCTGCTAGCAATGCAAATCCTGAATATATGGGAATGAATTACATGGATTCTATTGCAGAACTTCAGAAACAAACACAGTTATTGAGTTTGGAGAATCATTTAGATCATGTGAATATCGGAACTCGTGGTGTTGCTGTCAATGATTACAACAATGGCTTAGTTGATGCTTCTGCTGTCAATTTCGGTGGAAAACCTACAAAAAGGCTTTCACATTCGAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTCGACATGGAAGTAACTGCCGATATTTTCATGGTCAAGTTTCACATGATAGCTTCTCTCCTCATATGCATGGAAATAATGATAATACTAGTAATGAGGATCCGGTGATTTCGCCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTGAAGCAGAGAAGAGGTAATCCGATGTCAATTGCTTCACTGCCGATGGCATACTATGATAAGTATAAGAAGGTATTGCAAGCTCAAGGTTATTTAACCGAGAGCCAAAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTGCTTGTGCGACTTAATAGCATTCGGCTAATCGACAGGCCTCATGGACAGCATGCAGTGATACTGGCTGAAGATGCTCCGAAATACATTCAAAAGGGTGATTCTGTTCAAAATATCAGTGCTTCGCGACAGATATATTTGACTTTTCCAGCTGACAGCACTTTCACAGAAGAGGATGTTGCGAACTACTTCAACACATTTGGATTTGTTGAAGATGTTAGGATTCCATGTCAGCAGAGACGGATGTTTGGGTTTGTAACATTTGCTGAACCTGAAACCGTTAGAATGATTTTGGATAAGGGAAATCCACATTATGTTCGTGGGTCTCGTGTGCTTGTGAAGCCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCAAGATAGGATGGAGCATTCTATTTGTTGTCCCCATCACATTGCAAATATTGACTCTGAACTTGACTCAATTCCAATAAGTTATGGGACCCATAGATCACTAAGGAGACAGTTGATGGAAGAACACAATGCTCTTGAATTGCAAAGGAGACGTCTTGCCCATGCGCAGTTGCAGCAACGACCTTTGTCCATTTCACCTCAGTTCGGCTGCTTCCCCATGGATGCTTTAAGAGTTCCAGATGATCATTTCAATATCCAGTCTACGGAAGGTCTGAATTATGCGTTGAATAACAAAACCAAGAGTGCCGACACCGATTCCTCTGAAGGGAATAGCAATGAAGGATTCAATCTGCCTGACAGTCCATTTGCATAG 1641 0.4083 MDISDYTRIVFDKIQKFEPENATKIMGYLLLQDHGEQELARLASCPDHFIGEVVFKAKTDLQMLAVNPTMMPISPPNVNPQQGLSHFPGLSSSSPPNFQLPSPYWNQQSASNANPEYMGMNYMDSIAELQKQTQLLSLENHLDHVNIGTRGVAVNDYNNGLVDASAVNFGGKPTKRLSHSNMSEFPLKICHYFSKGYCRHGSNCRYFHGQVSHDSFSPHMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAQGYLTESQRHGKSGYSLTKLLVRLNSIRLIDRPHGQHAVILAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVANYFNTFGFVEDVRIPCQQRRMFGFVTFAEPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYQDRMEHSICCPHHIANIDSELDSIPISYGTHRSLRRQLMEEHNALELQRRRLAHAQLQQRPLSISPQFGCFPMDALRVPDDHFNIQSTEGLNYALNNKTKSADTDSSEGNSNEGFNLPDSPFA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03986 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 414 IPR000504 GO:0003723
Tsu05g03986 546 Gene3D - 149 219 - -
Tsu05g03986 546 Gene3D - 339 418 IPR012677 -
Tsu05g03986 546 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 546 - -
Tsu05g03986 546 Coils Coil 458 478 - -
Tsu05g03986 546 CDD RRM_AtC3H46_like 341 410 IPR034365 -
Tsu05g03986 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 406 IPR000504 GO:0003723
Tsu05g03986 546 MobiDBLite consensus disorder prediction 522 546 - -
Tsu05g03986 546 SUPERFAMILY RNA-binding domain, RBD 350 427 IPR035979 GO:0003676
Tsu05g03986 546 SMART rrm1_1 340 410 IPR000504 GO:0003723
Tsu05g03986 546 SUPERFAMILY CCCH zinc finger 187 209 IPR036855 GO:0046872
Tsu05g03986 546 ProSiteProfiles OST-type HTH domain profile. 238 321 IPR025605 -
Tsu05g03986 546 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 546 - -
Tsu05g03986 546 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Tsu05g03986 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 210 IPR000571 GO:0046872
Tsu05g03986 546 Pfam OST-HTH/LOTUS domain 238 315 IPR025605 -
Tsu05g03986 546 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03986 Tsu-Chr5 50826412 50831704 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03986 - - gmx:100818984 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03986 05 50826412 50831704 Tsu05g03986 05 50826412 50831704 ECH
Tsu03g01129 03 10611643 10615817 Tsu05g03986 05 50826412 50831704 PCT