Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03932 ATGTGGAAACCACGCGCTTTCtctctgcttcttcttcttcttcttcagttgCTACTACTAGCTTCTGTTTCTGCTGCTAAAAGGAGTAAGAGATCTCAATGGAACACACTCACTGGAAGTCCACCGTTGGTCATAGCACATGGTGGATTTTCAGGTCTATTTCCCGATTCCAGTGAGAATGCCTATACATTGGCCGCAGAAACGAGCGTAGCAGATGCCGCACTATGGTGTGATGTCCAATTGACGAAAGATAAAGTTGGAATTTGCGTTCCAAGTGTTGACCTTGACATTGCTACTGACATTTCATATTTTATCCCAAATAAAAGTACAAGTTACTTGGTTAATGGTGTATCGACCCGTGGATACTTTTCTGTGGATTACAACTTCCAGGATATATCGGGCATTTCTTTAACTCAGTTAATACATTCTCGGTCACCCGTGTTCCATGGCACCGGTTATGTAATTAATACCGTCGAAGATGTAGTCAAATTAGTGGCCTCACAAACACCTGGTTTGTGGTTGAATATTCAGCATGATGCATTCTACACCCAACACAACTTGAGCATGAAAAGTTTTGTACTCTCAATTTCTAGAAAACTACGTGTCAGATATATCTCATCACCCGAGGTTGGTTTTCTGAGAAGTATTACAACACGCTTCAactcaaaaaaaacaaaacttgtcCTTAGGTTTCTTAATCCGGATGACACAGACCCATCAACCAACCAGACTTATAGTTCATTACTAAAAAATCTGACGTTTATCAAGACCTTTGCTTCCGGAATTCTTGTTCCCAAGAGATACATTTGGCCTGTCGATGCTAGTCGTTATCTACAACCACATACCTCTTTGGTCTACGATGCACATAAACTGGGGCTGGAAGTTTTTGCATCAGATTTTGCAAATGATGACTTACTTAGCTTTAATTATAGTTATGATCCCATTGTTGAGTACCTTCAATTCATTGATTACGGTGACTTAACCGTTGATGGTGTCCTGTCTGATTTTCCGGTAACTGCTTCCGAAGCTATCGATTGCTTTGCTCATCAAGGCACCAATGCTACGAGAAGAGATAAAACTTTGATTATCTCAAAATATGGGGCAAGTGGAGATTATCCAGCCTGTACCGACATAGCATATAAACAGGCCATATCGGATGGTGTGGATGTTCTTGACTGTCCTGTTCAAATGTCAAAGGACGGAACACCCTTTTGCTTAAGCTCCACTGATCTTCTAGAGAGTACCACAGTTGCTCAAACAAGCTTCAGAAGTTTTGCCATGAGAATTCCTGAGATAAAATCTGACCCTGGGATATTTTCGTTCAACTTATCATGGACTGATATAAAAGGCCTTACCCCCTTAACAATGAACCCTTTTGCAAATTACACATTGTTCAGGaatccaaaatataagaacGCTGGGAATTTTGTAACATTATCAGATTTCTTGACGCtgacaaaaaatcaaacttcTCTATCAGGCATCCTGATCATTGTTGAGAATGCAGCCTACCTCGCAGAAAAGCAGGGATTAGGTGTGATTGATGTCGTCATTGATGCTTTGAGCAAAGCAGGTTATGATAAACCAGGAAGCCAAAAAGTTTATATTCAATCCACTAATAGCTCTGTATTGCTGAAATTCAAGGAAAAAACCAATTACGAGCTTGTGTACAAGATTGACGAGGTTGTCAGTGACGCTTCCAATGCAGCTGTTGAGGATATAAAAAACTTCGCCAGTTCAGTGGTTATCAACAAGGATTCTGTATTTCCTCGTAACAATGGCTTCGTGACTAGCAATTTAACAGGGATTGTGCCAAAGCTAAAAGCTTCTAACCTCTCGGTTATTGTAGAAACTTTCAGCAATGAGTTTGTATCTCAGGCATGGGATTTCTACTCAGATTCAACTGTGGAGATCAACTCATTTATTCAAGGAGCCGAAATTGATGGGATCATTACAGACTTCCCTAAAACGGCTAATAGATACACAAGAAACAAATGCTTAAACTTGGATGACAAGACACCTCCTTACATGCGACCAGTTGAAGCAGGTGGTCTTTATAAACTCATCGACGAGCATTCATTGCCTCCGGCTATGGCTCCATACCCTCTCTTGACTAATTCTGAAGTGATAGAGCCACCTTTGCCACCTGTTGCTAAAATAATCTCAGCTTCTAGCCCTGCTGCCGAAACCAAGTCACCTCCCGGAAACACACAGCCTAAGGTTACTGCATGCTTCTTGTCTAATGTGGCTGTGTTTTTAACTTATCTTCTTTTCCTTTGA 2280 0.3965 MWKPRAFSLLLLLLLQLLLLASVSAAKRSKRSQWNTLTGSPPLVIAHGGFSGLFPDSSENAYTLAAETSVADAALWCDVQLTKDKVGICVPSVDLDIATDISYFIPNKSTSYLVNGVSTRGYFSVDYNFQDISGISLTQLIHSRSPVFHGTGYVINTVEDVVKLVASQTPGLWLNIQHDAFYTQHNLSMKSFVLSISRKLRVRYISSPEVGFLRSITTRFNSKKTKLVLRFLNPDDTDPSTNQTYSSLLKNLTFIKTFASGILVPKRYIWPVDASRYLQPHTSLVYDAHKLGLEVFASDFANDDLLSFNYSYDPIVEYLQFIDYGDLTVDGVLSDFPVTASEAIDCFAHQGTNATRRDKTLIISKYGASGDYPACTDIAYKQAISDGVDVLDCPVQMSKDGTPFCLSSTDLLESTTVAQTSFRSFAMRIPEIKSDPGIFSFNLSWTDIKGLTPLTMNPFANYTLFRNPKYKNAGNFVTLSDFLTLTKNQTSLSGILIIVENAAYLAEKQGLGVIDVVIDALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTNYELVYKIDEVVSDASNAAVEDIKNFASSVVINKDSVFPRNNGFVTSNLTGIVPKLKASNLSVIVETFSNEFVSQAWDFYSDSTVEINSFIQGAEIDGIITDFPKTANRYTRNKCLNLDDKTPPYMRPVEAGGLYKLIDEHSLPPAMAPYPLLTNSEVIEPPLPPVAKIISASSPAAETKSPPGNTQPKVTACFLSNVAVFLTYLLFL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03932 759 CDD GDPD_SHV3_repeat_2 361 661 - -
Tsu05g03932 759 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 344 IPR017946 GO:0006629|GO:0008081
Tsu05g03932 759 Gene3D Phosphatidylinositol (PI) phosphodiesterase 359 662 IPR017946 GO:0006629|GO:0008081
Tsu05g03932 759 ProSiteProfiles GP-PDE domain profile. 360 662 IPR030395 GO:0006629|GO:0008081
Tsu05g03932 759 SUPERFAMILY PLC-like phosphodiesterases 359 661 IPR017946 GO:0006629|GO:0008081
Tsu05g03932 759 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 12 755 - -
Tsu05g03932 759 ProSiteProfiles GP-PDE domain profile. 42 332 IPR030395 GO:0006629|GO:0008081
Tsu05g03932 759 SUPERFAMILY PLC-like phosphodiesterases 41 344 IPR017946 GO:0006629|GO:0008081
Tsu05g03932 759 Pfam Glycerophosphoryl diester phosphodiesterase family 367 657 IPR030395 GO:0006629|GO:0008081
Tsu05g03932 759 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 12 755 - -
Tsu05g03932 759 CDD GDPD_SHV3_repeat_1 42 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03932 Tsu-Chr5 50297140 50301625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03932 5 759 Receptor kinase-like Gene Family AT4G26690 53.553 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03932 - - gmx:100811399 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03932 05 50297140 50301625 Tsu05g03932 05 50297140 50301625 ECH
Tsu03g01156 03 10828068 10832713 Tsu05g03932 05 50297140 50301625 PCT