Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03905 ATGTTCTTCTACAAGCTTTTCTCCCGTTTCTCAACAACCATTTCCCGAACATCACTTCTCTCTACTCAGCGAGTCCCCCAACAGCAATTCCATAACTTCTCCAATCAATTTCATTCCCTTATCATTCCTCAATCTACCAACAAGCTAATTCCTGTTCAAGTCAATATCTTATGTCCATCTATAAATTATTCAACAcaaaaatttggattttcttCATCAGCCTCAACTGAAACAGAAGGGGAAAGAGGGAATAATGTGCATAATGGTAATTCCACAAATGACGACCCTGCAAAAACAAGTGAAGAGGCAAATGAAACTGATCAGCCTGGACAAGCCAAGCCTGCAGATCAAACAGAAGAGTCGGGATCTATTTCAgattctcaatctcaaactGTCAAAAGGAGAGGTGTTAAACGAACTGCATTTTCTGATTCAGATTCAGATTCCGAGAGTGAATCGGATTTATCCAGGGATGATTTGATTAAGCGTGTAGCTGAGAAGGATGAACTTTTGAAATTGAAGCAAAAAGAGATTGAGAAAATACAGGATAAATTTCTGCGGACTTATGCAGAGATGGAGAATGTCATGAACAGGACTCAACGTGAAGCAGAGAATTCAAAGAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTTGATGTTGCGGATAATTTGGGAAGAGCTTCATCAGTTGTAAAGGAAAGTTTTTCCAAAATCGATACATCGAGTGACTCTGCTGAAGCGGTGAAACTCCTGAAGACACTTCTGGAAGGTGTTGAAATGACCGAAAAACAACTTTCAGAGGTGCTTAAAAAGTTTGGAGTAGAAAAATTTGACCCGACAAATGAGCCCTTTGATCCACATAGGCATAATGCAGTCTTCCAGGTACCCGATGATTCCAAGCCCCCAGGCACTGTTGCTGCTGTGCTGAAGGCAGGATATTTGCTTCATGGTCGTGTAATTCGACCAGCGGAAGTTGGTGTAACCCAAGCAAAAGAAGATAACAATCGAGCAGAATGA 1020 0.3941 MFFYKLFSRFSTTISRTSLLSTQRVPQQQFHNFSNQFHSLIIPQSTNKLIPVQVNILCPSINYSTQKFGFSSSASTETEGERGNNVHNGNSTNDDPAKTSEEANETDQPGQAKPADQTEESGSISDSQSQTVKRRGVKRTAFSDSDSDSESESDLSRDDLIKRVAEKDELLKLKQKEIEKIQDKFLRTYAEMENVMNRTQREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTSSDSAEAVKLLKTLLEGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAVFQVPDDSKPPGTVAAVLKAGYLLHGRVIRPAEVGVTQAKEDNNRAE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03905 339 Pfam GrpE 164 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 CDD GrpE 179 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 PANTHER GRPE PROTEIN HOMOLOG 126 331 - -
Tsu05g03905 339 Gene3D - 158 273 IPR013805 -
Tsu05g03905 339 Hamap Protein GrpE [grpE]. 94 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 PANTHER GRPE PROTEIN HOMOLOG 12 105 - -
Tsu05g03905 339 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 165 274 IPR013805 -
Tsu05g03905 339 MobiDBLite consensus disorder prediction 72 136 - -
Tsu05g03905 339 Gene3D Head domain of nucleotide exchange factor GrpE 274 330 IPR009012 GO:0006457
Tsu05g03905 339 PRINTS GrpE protein signature 282 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 PRINTS GrpE protein signature 309 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 PRINTS GrpE protein signature 186 202 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 Coils Coil 164 184 - -
Tsu05g03905 339 PANTHER GRPE PROTEIN 12 105 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 PANTHER GRPE PROTEIN 126 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 MobiDBLite consensus disorder prediction 72 156 - -
Tsu05g03905 339 ProSitePatterns grpE protein signature. 285 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu05g03905 339 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 275 331 IPR009012 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03905 Tsu-Chr5 50059281 50062848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03905 K03687 - gmx:100803396 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03905 05 50059281 50062848 Tsu05g03905 05 50059281 50062848 ECH