Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03899 ATGGAGTTGGAGTTCGATCCGATCCCAATCGGTTCGTGCTCCAAAGAGCATCAGAACATTTACCAGCAATGGTTCAATTTCGCTGATTCAGATAGTGATGGACGCATAACGGGGAATGATGCCACCAAGTTTTTCGCCATGTCTAATTTGTCTCGTCAAGATCTTAAACAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGTTATCTAGGTTTTCAAGAGTTTATCATTGCTATGCAGGTAGTTTCTTTGGCACAATCTGGACACCCAATAACACATGATCTGCTGAATAGTGATGTTGATTTGAAAAATCTAAAACCTCCCATAATGGAGGGTTTGGATGTATTACTAGCTaaaaaaaaacataaacaaaaagacACTGATGTAAATGGTAGTTCTCAATTACAGCCATCACCATCAAGCAGTTGGTTTTCTTCGAAGTCCACAAAAAAGGTGCCACTTTCCTCTGTGACATCAATAATTGATGGCTTGAAGAGACTCTATATCCAGAAGCTGAAGCCTTTAGAAGTCACTTACCGCTTTAATGATTTTGTCTCCCCATTATTGACAAATAGTGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAATATTCAACTGGTAAAACAACATTTATCAAACATCTACTTAAATGTGGTTATCCAGGTGCACATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGCATTCCAGGAAATACTGTTGCTGTCCAAGCAGACATGCCTTTTAGTGGACTTACAACTTTTGGCACagcttttttatcaaaatttgagTGTTCACAAATGCCACATCCTCTACTGGAGCACATTACATTTGTAGACAGTCCTGGAGTTCTATCTGGAGAAAAGCAACGGACACAACGAGCATATGATTTTACAGGTGTAACATCTTGGTTTGCTGCGAAGTGTGATTTGATACTCCTCTTGTTTGATCCTCACAAACTTGATATTAGTGATGAGTTCAATCGCGTGATAACTTCTTTGCGGGGACATGATGACAAAATTCGAGTAGTTTTGAACAAGGCAGATCAAGTTGATACTCAACAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTCGGGAAGGTGCTGAATACACCTGAAGTCACTCGTGTGTATATTGGCTCCTTTAACGACAAGCCTGTAAATGATGCTGTCAGTGGTCCAATTGGAAAGGAACTGTTTGAAAAAGAACAGGAAGACCTTCTTTCAGATCTGAAAGATATACCAAAGGCAGCTTGTGATCGAAGAATCAATGAATTTGTTAAACGAGCCCGAGCAGCCAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCGATGATGGGCAAATCTAAAGCTCAGCAAAAACTAATTGATAACTTGGCGGGTGAATTTGGAAAGGTACAAAGGGAGTTTCATTTACCTCCTGGTGACTTTCCAAATGTTGAGCATTTCAGAGAGAGCTTGCGTGGTTATAATATCGACAAGTTTGAGAAATTGAAGCCAAAAATGATACAGGTAGTTGATGACATGCTTGCCTACGACATTCCTAACCTCTTGAAGAATTTTAAGAATCCCTATGATTAA 1638 0.3926 MELEFDPIPIGSCSKEHQNIYQQWFNFADSDSDGRITGNDATKFFAMSNLSRQDLKQVWAIADSKRQGYLGFQEFIIAMQVVSLAQSGHPITHDLLNSDVDLKNLKPPIMEGLDVLLAKKKHKQKDTDVNGSSQLQPSPSSSWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCGYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVITSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVTRVYIGSFNDKPVNDAVSGPIGKELFEKEQEDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKSKAQQKLIDNLAGEFGKVQREFHLPPGDFPNVEHFRESLRGYNIDKFEKLKPKMIQVVDDMLAYDIPNLLKNFKNPYD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03899 545 CDD EHD 199 443 - -
Tsu05g03899 545 Pfam N-terminal EH-domain containing protein 163 195 IPR031692 -
Tsu05g03899 545 CDD EH 21 87 IPR000261 GO:0005515
Tsu05g03899 545 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Tsu05g03899 545 Pfam Domain of unknown function (DUF5600) 435 536 IPR040990 -
Tsu05g03899 545 MobiDBLite consensus disorder prediction 125 147 - -
Tsu05g03899 545 Gene3D - 164 536 - -
Tsu05g03899 545 MobiDBLite consensus disorder prediction 129 147 - -
Tsu05g03899 545 Pfam Cytoskeletal-regulatory complex EF hand 17 82 IPR000261 GO:0005515
Tsu05g03899 545 Gene3D - 200 428 IPR027417 -
Tsu05g03899 545 PANTHER CALCIUM-BINDING EF HAND PROTEIN 21 543 - -
Tsu05g03899 545 SMART eh_3 10 105 IPR000261 GO:0005515
Tsu05g03899 545 ProSiteProfiles EH domain profile. 17 95 IPR000261 GO:0005515
Tsu05g03899 545 SUPERFAMILY EF-hand 14 100 IPR011992 -
Tsu05g03899 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 466 IPR027417 -
Tsu05g03899 545 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 194 430 IPR030381 GO:0005525
Tsu05g03899 545 Gene3D - 12 109 - -
Tsu05g03899 545 PANTHER EH DOMAIN 21 543 - -
Tsu05g03899 545 Pfam Dynamin family 200 359 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03899 Tsu-Chr5 50015891 50021755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03899 3 545 EF-hand Containing Proteins AT3G20290 84.037 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03899 K12483 - gmx:100804468 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03899 05 50015891 50021755 Tsu05g03899 05 50015891 50021755 ECH