Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03895 ATGAAGGCAAGTaaagttgaaaataatttgatatggtCTTTGACACTATGCCATGTCTTACTTTCTCTCATCTCAATCTCCCTTACCTCTTGTGAATCTTTTAACTATGGCCAAGCCTTGTCACAAAGCCTCCTCTACTTTGAGGCACAACGTTCAGGTCACTTACCCTACAATCAAAGGGTCAATTGGCGTCACCATTCTGGTCTCACTGATGGCCTTGAAGAAGAGGTAGACTTGGTGGGAGGATACTATGATGCAGGGGACAATGTAAAATTTGGACTACCAATGGCATTTACCATAACTCTCCTTTCTTGGGCTACTATAGAGTACGGCGAACAAATCGCCGCCGCTGGAGAGTATGGCCACACGATGGAGGCTATAAAGTGGGGGACCGACTATTTCATCAAGGCTCACGCACAACCAAATGTTCTATGGGCCGAGGTAGGTGATGGAGAGACCGATCATTATTGTTGGCAGCGACCAGAGGACATGACAACACCACGAAGAGCTTATAAGGTTGATGAAAACAACCCCGGTTCTGATGTCGCCGGCGAGACGGCTGCAGCTTTGGCAGCAGCATCCattttgtttaagaaaatagaCCCACATTACTCTCGAGTAGTCTTGCATCATGCACAACAGTTATTTGAGTTTGGTGACAAGTTCAAGGGCAAGTATGATGAGAGTGTTAGAGTGGCTAAAGGGTACTATACTTCAGTTAGTGGGTACAAAGATGAGTTACTATGGGCTGCAATTTGGTTATATAAGGCCacagaaaaagaagaatattTAAACTATGTTTTGGAAAATGCTTATGATTTTGGTGGGACCACTTGGGCTATGACAGAGTTTAGCTGGGATGTTAAGTATTCAGGTGTTCAAGCCATTGCTTCAATGcACCTTAtggaagaaaaacacaagaaacatGAAGCCATATTGAAACAATATCGTTCAAAAGCGGAGCATTATTTTTGTGCATGTCTTAATCTCAACAATGAGACTAAGGCTAATGTGGATAGGACCCCAGGAGGATTACTATATGTTCGACAATGGAATAATATACAATATGCTGCAAATGCAGCATTTCTTCTCACTGTTTACTCTGATCATCTCTTAGCTGCAAATCAAACGTTGCATTGCCAAAAAGGCGAAGTAGGTCCCGATGAACTCTTTGCCTTTGCAAAATCACAAGTTGATTACATCTTAGGTTCTAATCCAATGGGTATGAGCTATTTTGTTGGCTATGGTCCTAAATTCCCACAAAAGGTGCACCATAGAGGTGCATCCATTGAATCATATAAAAAGAACATGGGATTTATAGGGTGCACTCAAGGCTATGAAAATTGGTATGAAAGTCCTAAGCCTAATCCAAACATACTCATTGGTGCTCTTGTTGGTGGGCCTGATAACAATGACAAATTTAGTGATGAAAGAAGCAATTATGAGCAGTTGGAAGCTTGTACCTACAATACTGCTGCACTTGTAGGGGTTTTTGCTAGATTGAACAACTTAGAATAA 1518 0.4025 MKASKVENNLIWSLTLCHVLLSLISISLTSCESFNYGQALSQSLLYFEAQRSGHLPYNQRVNWRHHSGLTDGLEEEVDLVGGYYDAGDNVKFGLPMAFTITLLSWATIEYGEQIAAAGEYGHTMEAIKWGTDYFIKAHAQPNVLWAEVGDGETDHYCWQRPEDMTTPRRAYKVDENNPGSDVAGETAAALAAASILFKKIDPHYSRVVLHHAQQLFEFGDKFKGKYDESVRVAKGYYTSVSGYKDELLWAAIWLYKATEKEEYLNYVLENAYDFGGTTWAMTEFSWDVKYSGVQAIASMHLMEEKHKKHEAILKQYRSKAEHYFCACLNLNNETKANVDRTPGGLLYVRQWNNIQYAANAAFLLTVYSDHLLAANQTLHCQKGEVGPDELFAFAKSQVDYILGSNPMGMSYFVGYGPKFPQKVHHRGASIESYKKNMGFIGCTQGYENWYESPKPNPNILIGALVGGPDNNDKFSDERSNYEQLEACTYNTAALVGVFARLNNLE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03895 505 Gene3D - 32 504 IPR012341 GO:0005975
Tsu05g03895 505 Coils Coil 299 319 - -
Tsu05g03895 505 PANTHER ENDOGLUCANASE 7 503 - -
Tsu05g03895 505 Pfam Glycosyl hydrolase family 9 36 497 IPR001701 GO:0004553|GO:0005975
Tsu05g03895 505 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Tsu05g03895 505 PANTHER ENDO-1,4-BETA-GLUCANASE 7 503 - -
Tsu05g03895 505 SUPERFAMILY Six-hairpin glycosidases 33 503 IPR008928 GO:0005975
Tsu05g03895 505 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03895 Tsu-Chr5 49964145 49967137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03895 17 500 Glycoside Hydrolase AT2G32990 68.826 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03895 - - gmx:100786912 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03895 05 49964145 49967137 Tsu05g03895 05 49964145 49967137 ECH