Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03874 ATGATGTCTCTGCCGCTAGGAGATCCACCGAGGCCGTGTGAGCTGGAGGTCATTGTACATGAGGCAGCTGATGAGGAAGGGCTCATTGCCTTAAGCTTGACAGATAAAATCAATAGGATGGGGCAGATTGCCGAAGATTTGTTGGCTAGTGGGGAGTTATCGGAGGGTCACGTGTCCGTAGAGATGTGCATGAAATTTGGGGTGTTGGAAATTGTGCACAACAAAACAAGATCGCCGAAAATGGAGGACATGGATGATGAAATCGATGACGTTCCTCAGGTTTACATGGCCTGCATACAAAATGGTCATAGAATTGGAGTTTCTTATTATGATTCCAGCCTCCGACAACTAAATATGCTTGAAGCTTGGGATGATGGGGACAAAGGTTTTTCGGTTATTGATCTGGTGAAATATCAAGCAAACCCTCTGGTCATATACACAAGCACTAAATGTGAAGAATCTTTCTTGGCTGCTCTGCAACGAAGTGATGAAGTAGCTGAGGCATATACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTACGAGCAAGCGTGGCACAGATTAATTTACCTTCGGGTGGCGGGAATGGATGATGGATTAGACGTCAAGGAGAGGATTTACTTTTTGAGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGACACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTATCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAGATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTAtaattttttgtcGTATTCCCATTTCAGACAGTGGTTCTTGAGGCCCATACTTGATCTTGAAGTTCTAAACTACCGCTTAAATTCTATATCTTTCTTTCGATGCTCAGAAGAACTTGTTGCTTCTTTACGTGAAACCCTGAAATCTAAATTTGACTCTCCAAGCTCCATATGCACTAGCAATGATTGGGCAGCACTTCTGAAGAGCATCAGTGCACTATTGCATGTAAACAAGATATTTGAAGTTGGAATTTCCGAAGGCCTTCAAGAAGAATTGAAGTACTTGAACTTGGATATTGTTGAGATGGCAAATTCATGCATAACAACGGAGCTTGCTTATGTCTATGAGCTGATAATTGGGGTTATTGATGTAAATAGAAGTAAAGAGAAGGGTTATACGACGGTTGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAGGAACTGCCAGAATTCCTGGAAGAGGTTTCATCATTGGAACTTGCACAACTCCCTGATCTATGCAAGGACAAGCTTGTTCCCTGTATTGTTTATATACAGCAAATAGGTAGATATTTGATGTGCATCTTTGAAGAAAAACTAGAAGAAGCTACTCTGGAGAAACTTATAGAATGGGAATACACTttttgtgatgaagatggagaGACGAAAAGATATTTTTATCGCACGCCAAAGACACGAGAATTGGACAATCTTCTAGGAGATATCTATCATAAAATTCTAGATATGGAGAGGGCAATCACTAGAGACTTGTTTTCACACGTATCATTGTTCTCAACCCATTTGATAAAGGTTTCAACTTTTGCGGCTGAACTGGACTGCTTTTTGTCAATGGCTTTGGTTGCTCGACAGAACAATTATGTCAGACCTTTATTGACCGAAGAAAACATGCTCGATATAAAAAATGGAAGGCATGTTTTACAGGAAATGACTGTAGACACATTTATTCCTAACGATACTAAGATTTTTCATGAtgGAAGAGTTAATATCATTACTGGTCCTAACTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTGTAATTGTTTTCCTGTCCCACATTGGTAGTTTTGTACCAGCTGATGCAGCAACTGTTGGGCTGACAGATAGAATATTTTGTGCGATGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTTATGATTGATCTACATCAAATTGGGATGATGTTGAGGCATGCTACTTCACGATCTCTGTGTCTAGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGACGGCATTGGTCTGCTTGCCGGGGCCATAAATCACTTTATCACATGTGATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTGATGGATTTATTGCATGGGTGTTCTTTGACCAAGTCTGAGCAGATTAAGTTCTACACGATGAGTATACTGAGGCCTGAAGACAATTCAACTCAAATGGAAGACATCGTATTTTTATATAGGTATCTTTTTGTTGATTCTGCCATATCAAGCTACATCATTCATGCAGGCGTGCCAGACGAAATTATAAAAAGAGCAGCAGTTGTGTTGGATGCTGTTTCAAAAAACAATTCTGTTGAGAGGTTATGCAATGAGAACATCTCCGTTCAAGAAGATGAATACAAGGATGCCATGGAGAAATTGTTGAAATTCGATATTGACAATGGCGACTTAAACCTTTTTTTCGAGGAGATATTCTCTAGTTCCTGA 2607 0.3943 MMSLPLGDPPRPCELEVIVHEAADEEGLIALSLTDKINRMGQIAEDLLASGELSEGHVSVEMCMKFGVLEIVHNKTRSPKMEDMDDEIDDVPQVYMACIQNGHRIGVSYYDSSLRQLNMLEAWDDGDKGFSVIDLVKYQANPLVIYTSTKCEESFLAALQRSDEVAEAYTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLDVKERIYFLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFIKLDAAAHEALQIFQIDKHPSHMGIGRAKEGYNFLSYSHFRQWFLRPILDLEVLNYRLNSISFFRCSEELVASLRETLKSKFDSPSSICTSNDWAALLKSISALLHVNKIFEVGISEGLQEELKYLNLDIVEMANSCITTELAYVYELIIGVIDVNRSKEKGYTTVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPDLCKDKLVPCIVYIQQIGRYLMCIFEEKLEEATLEKLIEWEYTFCDEDGETKRYFYRTPKTRELDNLLGDIYHKILDMERAITRDLFSHVSLFSTHLIKVSTFAAELDCFLSMALVARQNNYVRPLLTEENMLDIKNGRHVLQEMTVDTFIPNDTKIFHDGRVNIITGPNFSGKSIYIKQVAVIVFLSHIGSFVPADAATVGLTDRIFCAMGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGAINHFITCDEPPKVFVCTHLMDLLHGCSLTKSEQIKFYTMSILRPEDNSTQMEDIVFLYRYLFVDSAISSYIIHAGVPDEIIKRAAVVLDAVSKNNSVERLCNENISVQEDEYKDAMEKLLKFDIDNGDLNLFFEEIFSSS 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03874 868 Gene3D - 265 469 - -
Tsu05g03874 868 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 85 860 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tsu05g03874 868 SMART DNAend 289 610 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu05g03874 868 PANTHER MUTS PROTEIN HOMOLOG 5 85 860 - -
Tsu05g03874 868 ProSitePatterns DNA mismatch repair proteins mutS family signature. 705 721 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu05g03874 868 SUPERFAMILY DNA repair protein MutS, domain III 303 585 IPR036187 -
Tsu05g03874 868 CDD ABC_MSH5_euk 598 801 - -
Tsu05g03874 868 PIRSF MSH2 55 857 IPR011184 GO:0005524|GO:0006298|GO:0030983
Tsu05g03874 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 755 IPR027417 -
Tsu05g03874 868 Pfam MutS domain III 303 578 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu05g03874 868 SMART mutATP5 625 817 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu05g03874 868 Gene3D - 586 855 IPR027417 -
Tsu05g03874 868 Pfam MutS domain V 629 817 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03874 Tsu-Chr5 49771057 49785778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03874 K08741 - gmx:100797567 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03874 05 49771057 49785778 Tsu05g03874 05 49771057 49785778 ECH