Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02623 ATGTGCAATCCAAAACCATCTTCACCAACATCACCATTTCTTTCTCCAACAAAAACTCACCTCATAAACCCTCACACTAAATCTGTTTATTCCAATCCTACCCTCGATGATGATCTTGTTCAAGATGAGCTTCAAAGATGGCCTACTCTTAAAGAGGCCTTAACAGAAATCAAAGAAATAGGAAAAATATCAGGTCCAACAACAATAACTGGTTTATTGCTATATTCAAGAGCTATGATCTCAATGATTTTTCTTGGTTACCTTGGTGAGATGGAACTAGCAGGAGGATCACTTTCAATAGGCTTTGCAAATATCACTGGTTACTCAGTGATATCAGGATTAGCCATGGGAATGGAACCGATTTGTGGACAAGCTTATGGAGCAAAACAATGGAAGATACTTGGTTTAACACTTCAAAGAACAGTTTTACTTCTTCTTTCAACTTCAATCCCTATCTCATTCATTTGGTTCAACATGAAAAGAATCCTTTTGTTTTCAGGTCAAGACCAAGAAATTTCATCAATGGCACAAACTTTTATACTTTTTTCAATACCTGATCTTTTTCTACTCTCAATTCTTCATCCTTTGAGAATCTATTTAAGGACTCAAGGAATAACATTGCCATTAACATATTGTTCAGCTGTTTCTGTTTTGCTTCATGTACCTCTTAATTTTCTTCTAGTGGTTCATTTTCAAATGGGAATTGCAGGGGTGTCAATAGCAATGGTTTTGACTAATTTAAACCTTGTTATTTTACTTTCATCTTTTTTGTATTTCTCTAGAGTTTATAAGGACTCATGGATTTCACCAAGCTTAGAATGTATTAAAGGGTGGTCCTCATTGCTTTCGCTCGCTATTCCAACTTGTGTTTCGGTTTGTCTCGAATGGTGGTGGTATGAGTTCATGATAATGATGTGTGGACTTTTGGTTAATCCTAAAGCAACTATTGCTTCAATGGGAATCCTTATTCAAACAACTTCTTTGGTTTATGTTTTTCCATCATCACTTAGTCTTGGTGTTTCAACTAGAATAGGGAATGAGTTAGGTGCAAATAGGCCACAAAAAGCAAGAATTTCAATGATAGTTTCACTATTTTGTGCAATAATTTTAGGACTTGGAGCTATGCTATTTACAACATTGATGAGAAACCAATGGGGGAAATTCTTCACAAATGACAAAGAAATTCTTGAACTAACATCTATTGTGTTACCAATTGTCGGACTTTGTGAGCTTGGAAATTGTCCGCAAACAACAGGTTGTGGTGTTCTTAGAGGAAGTGCTAGACCAACAATTGGTGCTAACATAAATTTGGGATCATTTTACCTTGTTGGTATGCCGGTGGCAATCTTTTTAGGATTTGTTGCTAAATTTGGGTTTGCAGGGTTGTGGATTGGGTTACTTGCAGCTCAAGGCTCATGTGCTATGCTTATGTTGGTTGTTCTTTGTAGAACTGATTGGAATTTGCAAGTTCAAAGGGCTAAAGAACTCACAAAATCTTCAACAATAACTACTACTTGTGATGATGATCTTGATGCTAAATTACCTACATTTATGGAAGGTAAAAATATGAACAAGAATAATAATCATGGTTGTCTTGAAGAAATTGTGATCACTCATGATGAAAAAGATCCACTTAtcataacaacaacaactactactactactaccaaTTACATTGAAGATTAG 1686 0.3488 MCNPKPSSPTSPFLSPTKTHLINPHTKSVYSNPTLDDDLVQDELQRWPTLKEALTEIKEIGKISGPTTITGLLLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISFIWFNMKRILLFSGQDQEISSMAQTFILFSIPDLFLLSILHPLRIYLRTQGITLPLTYCSAVSVLLHVPLNFLLVVHFQMGIAGVSIAMVLTNLNLVILLSSFLYFSRVYKDSWISPSLECIKGWSSLLSLAIPTCVSVCLEWWWYEFMIMMCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRIGNELGANRPQKARISMIVSLFCAIILGLGAMLFTTLMRNQWGKFFTNDKEILELTSIVLPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAIFLGFVAKFGFAGLWIGLLAAQGSCAMLMLVVLCRTDWNLQVQRAKELTKSSTITTTCDDDLDAKLPTFMEGKNMNKNNNHGCLEEIVITHDEKDPLIITTTTTTTTTNYIED 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02623 561 PANTHER MULTIDRUG RESISTANCE PROTEIN 35 510 - -
Tsu05g02623 561 Pfam MatE 66 226 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu05g02623 561 Pfam MatE 287 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu05g02623 561 PANTHER PROTEIN DETOXIFICATION 35 510 - -
Tsu05g02623 561 CDD MATE_eukaryotic 56 492 IPR045069 GO:0042910|GO:1990961
Tsu05g02623 561 TIGRFAM matE: MATE efflux family protein 78 463 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02623 Tsu-Chr5 36087087 36088994 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02623 K03327 - qsu:111988266 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02623 05 36087087 36088994 Tsu05g02623 05 36087087 36088994 ECH