Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02606 ATGAATTTGCATGCCATGGTTTCTCTACCTTCCTCAGTTTCTGTCACTGCAACTCTTAACCTCCAACCACAATCCAGAAAATACCCACCAACCACTTTTCCACTAGATaagGGACAAAGCATTTCATTGCAGAAAAACCACATATCCACACATTTGAATCCCAGCAGCCACCTTAATTTTCAAGAAGCACTTTCATTTGCAAAAGAATGTAAAGAGGAAGTGGACTCATCTTTCTACATTCCCTTGTTACAACAATGCTTAGAAAACTGCTCCTTTTCATCCACACAAATTATTCACAATCACATAGTGAAAACAGGTAACCATGAAGACCCTTTTTTGTTAACATTTCTAATCAGTGTTTATGCCAAATGCGGTAACATGGAGGATTCTAGAAGAGCATTTGATCACTTGAACAGCAGAAATGTTGTTGCTTGGACAAATTTAATGAAGGGTTATGCACAAAACTCAATGCCAAAACATGTCGTACATTTGTTTCAAGAGATGTTACATTCAGAGTGTTACCCTTCAACTTACACTCTTGCTATAGCCGTTAATGCTTGTACATCTTTGCACTCTTTTAAGTTAGGAGAACAGTTACATGCTTACATGATCAAATACAATGTTGATTTTGACACAAGTATCGGCAATGCACTTTGTAGTTTATACTCTAAATGTGGTGGTAGGTTGGAATTTGGTCTAAAAGCATTTAGGagaatcaaagaaaaaaatgttatttcttGGACTGCTGCGATTTCTGCTTGCAGTGAAAATGGTGAAGCTGCGAAGGGTTTGAGAGTTTTTGTTGAGATGCTTTTAGATGAAGTGCAGGTTGAGCCTAATGAGTACACTTTAACTACTGTGTTGAGTCAGTGTTGTGAGGTTAAGTGCTTGGAGCTTGGCATTCAGGTGCATTCTTTGTGTACTAAATTAGGGTACGAATCGAACCTACACGTTCGAAATTCTTTATTGTATTTGTACATTAAATGCGGCTGTATCGGTGAAGCTCAAAGGGTTTCTAAAGGAATGGATGATGTGAATTTGATTACATGGAATGCTATGATTGCTGGATTTGCACAAATGATGGAACATTCAAAGGATAATCTTTCTGCTTACCGAAGTGGAAGTGAAGCACTCAAACTTTTATCCAAGTTGAATCGGTCTGGCATGAAACCTGATTTTTTTACACTCTCAAGTGCGTTGAGTGTTTGTAGTAGAATGATGGCTTTAGAACAAGGAGAACAGATTCATGCTCGGATTTTGAAAGGTGGGTTCATATCAGACGTTGTTGTAGGTTCTTCTATGGTTAATATGTATAACAAATGTGGAAGCATTGAGAGAGCAAGCAAAGCTTTTCTAGAGATGTCCATTAGAACAATGGTATTATGGACTTCCATGATTAATGGTTTTGCACAGCATGGTTGGTCAAAGCAAGCATTGGATCTTTTCGAAGATATGAAACTTGTAGGAGTTACACCAAACAAGGTCACTTTTGTCGGCATTTTATCGGCCTGTGAAAATGCTGGTATGACCAATGAAGCATTCAATTACTTTGAGATTATGCAAAAGGAATATAAAATTAAACCTGTGATGGACCATTATGCTCGTTTGGTTGATATGTTAGTGAGGCTCGGTCGGCTAGAGGAAGCTTTCAATTTGATACAGAAAATGGATTATGAAGCTAGTGAGTTTATTTGGTCGAATTTGATAGCTGGTTGTTTAAGCCAAGGGAATCTAGAATTGGGATGTCATGCCGCAGAAAAGTTATTAAGTCTCAAACCAAAAGATGCAGAGACATACGTATTGCTGTTGAATACGTACGCCTCAGCTGGGAGATTCGAGGAAGTTTCTAAAGTGAAGAATATaatgaaagaagagaaaattgaaaagttaaaggATTGGAGCTGGATTAGCATCAAAGACAGAGTATATTCATTTGAAACAAATGACAAGGCACACATAGAGAGTTCACTAGTAAATAAATCATTGGAGGATTTACTTGTGAAAGCAAAGAATCTTGGATATGAGATGTTAGAAAGTGTGGAAATAAGTGACAAAGAAGAGGATGTAAAAACATCTTCCCCTAACATTTATCACAGTGAAAAACTAGCCATTACATTTGGGTTGGAGAATTTGCCAAATTCTTCACCAATAAGAGTTGTTAAGAATACCTTAATGTGCAGGGATTGCCATAATTTTATGAAGTATATCTCAGCACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGAGGCTACATAAATTTGTCAATGGACAATGCTCTTGTGGGAATGTTGGTAGTTTTCTCTGA 2310 0.3658 MNLHAMVSLPSSVSVTATLNLQPQSRKYPPTTFPLDKGQSISLQKNHISTHLNPSSHLNFQEALSFAKECKEEVDSSFYIPLLQQCLENCSFSSTQIIHNHIVKTGNHEDPFLLTFLISVYAKCGNMEDSRRAFDHLNSRNVVAWTNLMKGYAQNSMPKHVVHLFQEMLHSECYPSTYTLAIAVNACTSLHSFKLGEQLHAYMIKYNVDFDTSIGNALCSLYSKCGGRLEFGLKAFRRIKEKNVISWTAAISACSENGEAAKGLRVFVEMLLDEVQVEPNEYTLTTVLSQCCEVKCLELGIQVHSLCTKLGYESNLHVRNSLLYLYIKCGCIGEAQRVSKGMDDVNLITWNAMIAGFAQMMEHSKDNLSAYRSGSEALKLLSKLNRSGMKPDFFTLSSALSVCSRMMALEQGEQIHARILKGGFISDVVVGSSMVNMYNKCGSIERASKAFLEMSIRTMVLWTSMINGFAQHGWSKQALDLFEDMKLVGVTPNKVTFVGILSACENAGMTNEAFNYFEIMQKEYKIKPVMDHYARLVDMLVRLGRLEEAFNLIQKMDYEASEFIWSNLIAGCLSQGNLELGCHAAEKLLSLKPKDAETYVLLLNTYASAGRFEEVSKVKNIMKEEKIEKLKDWSWISIKDRVYSFETNDKAHIESSLVNKSLEDLLVKAKNLGYEMLESVEISDKEEDVKTSSPNIYHSEKLAITFGLENLPNSSPIRVVKNTLMCRDCHNFMKYISALTSREIIVKDSKRLHKFVNGQCSCGNVGSFL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02606 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Tsu05g02606 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Tsu05g02606 769 Pfam DYW family of nucleic acid deaminases 695 764 IPR032867 GO:0008270
Tsu05g02606 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Tsu05g02606 769 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 70 703 - -
Tsu05g02606 769 SUPERFAMILY TPR-like 508 614 IPR011990 GO:0005515
Tsu05g02606 769 Pfam PPR repeat 536 556 IPR002885 -
Tsu05g02606 769 Pfam PPR repeat 432 454 IPR002885 -
Tsu05g02606 769 Pfam PPR repeat 245 271 IPR002885 -
Tsu05g02606 769 Pfam PPR repeat family 140 187 IPR002885 -
Tsu05g02606 769 Pfam PPR repeat family 459 504 IPR002885 -
Tsu05g02606 769 Gene3D Tetratricopeptide repeat domain 407 512 IPR011990 GO:0005515
Tsu05g02606 769 Gene3D Tetratricopeptide repeat domain 192 296 IPR011990 GO:0005515
Tsu05g02606 769 Gene3D Tetratricopeptide repeat domain 56 191 IPR011990 GO:0005515
Tsu05g02606 769 Gene3D Tetratricopeptide repeat domain 513 695 IPR011990 GO:0005515
Tsu05g02606 769 Gene3D Tetratricopeptide repeat domain 297 406 IPR011990 GO:0005515
Tsu05g02606 769 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Tsu05g02606 769 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Tsu05g02606 769 Pfam E motif 577 636 IPR046848 -
Tsu05g02606 769 PANTHER OS01G0913400 PROTEIN-RELATED 70 703 - -
Tsu05g02606 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02606 Tsu-Chr5 35795872 35799456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02606 79 764 Glycoside Hydrolase AT3G49170 33.141 1.50e-132 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02606 - - mtr:MTR_5g067140 1289.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02606 05 35795872 35799456 Tsu05g02606 05 35795872 35799456 ECH