Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02602 ATGGCCATGGCTCTTCGCAGACTCACCTCCTCCATCAACAAACCAACTTCACCTCTCATCAACACCGCTTCTCTTTATCGCATGTcatcatcttctctctccgcacAACAGAAGAATCACAAATCTCATCCCGATTGGATTAAGCAACTAAACGATCCTCTTGAAGTGGTGGATCCTGAGATCGAAGATATAATCGAACTCGAAAAAGCTCGTCAATGGAAGGGACTAGAACTTATACCTTCAGAAAATTTTACCTCGTTGGCGGTGATGCAAGCGGTTGGATCGGTTATGACGAATAAATACAGTGAAGGTTATCCTGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGGGCATTGGAAGCTTTTGGGTTGGATCCAACAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGGATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGATATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTTTATGATTATGCACGGATTCGCAAGGTCTGTGATAAACAAAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCTGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGGCCACGTGGGGCTATGATATTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGAAAGGGCAGGAAGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTACGGGCTTAGCAGTTGCATTGAAGCAGGCTATGACACCAGAATTTAAGAATTATCAAAAACAAGTTCTGAGTAACTCCTCGGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCCGGTGGAACTGAGAACCATTTGGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGCTCAAGGGTTGAGAAGGTGTTAGAATTAGCCCACATAGCTGCCAATAAAAACACTGTTCCAGGGGATGTGTCTGCTATGGTTCCCGGGGGAATCAGAATGGGAACCCCTGCTCTCACATCCAGAGGTTTTATTGAGTGCGATTTTAAAAAAGTTGCTGAATACTTTGATGTGGCAGTCAAAATAGCCTTACAGATTAAGGAAAATTCTAAAGGTTGA 1407 0.4193 MAMALRRLTSSINKPTSPLINTASLYRMSSSSLSAQQKNHKSHPDWIKQLNDPLEVVDPEIEDIIELEKARQWKGLELIPSENFTSLAVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPTKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIECDFKKVAEYFDVAVKIALQIKENSKG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02602 468 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 277 293 IPR019798 GO:0030170
Tsu05g02602 468 SUPERFAMILY PLP-dependent transferases 38 466 IPR015424 -
Tsu05g02602 468 CDD SHMT 57 467 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tsu05g02602 468 Gene3D Aspartate Aminotransferase, domain 1 58 466 IPR015422 GO:0003824
Tsu05g02602 468 Gene3D - 83 356 IPR015421 GO:0003824
Tsu05g02602 468 PIRSF SHMT 34 467 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tsu05g02602 468 Pfam Serine hydroxymethyltransferase 54 451 IPR039429 -
Tsu05g02602 468 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 4 467 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tsu05g02602 468 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 4 467 - -
Tsu05g02602 468 Hamap Serine hydroxymethyltransferase [glyA]. 53 468 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02602 Tsu-Chr5 35716120 35723601 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02602 K00600 - gmx:100816213 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02602 05 35716120 35723601 Tsu05g02602 05 35716120 35723601 ECH