Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02595 ATGCTATTTGGGAAAGGAATGTGGGCTCTTAGGATTGGAATTCAGATAGCTCAGAATATGTCACTTCCAAAGGTTGTTTTTGAAATGGACTCAAAGGTCATTGTCAACATGGTTACTTCAGAACATACAAAAGAACAACCAACACCACAAATAAGAACAACGCTACTCCGAACTCTTCAACGTTGCCACCAAATTTATCGCGTTTTTCAAGGTAGAATGGCGACGTTCGAACTTTATCGTAGGTCGGAGATCGGAACTTGCCTTACTGAGACTTTGGATGAGATGGTTCAGGCTGGAACTCTTAGTCCTGAGCATGCGATTCAGATTCTTGTTCAGTTTGATAAGTCTATGACTGAGGCTCTGGAAACTAAGGTTAAGAGCAAAGTTTCCATCAAGGGACATCTCCATACATACAGATTTTGCGACAATGTTTGGACCTTCATCTTGCAAGATGCTTTGTTTAAGAATGAAGACAAGCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATtggtgcgtacaagaggGAGAGACGGTAGAATTAGACATGCCGGCGTAGGACGTGGAGTTTCTATTCCTGTTGAGCAGGAACAGGATATTGAGCAACCTGTGTTTGTCGAGCAGCCTATGATGCAGGAGGATGAGGATGTTGCACAGCATGGATGGCCTGGAGGACCGCTTGATACGAGTATTCTGACGCGGTACTCAGACCATGTTgctcgttatatatggtttggcacggtataa 747 0.4096 MLFGKGMWALRIGIQIAQNMSLPKVVFEMDSKVIVNMVTSEHTKEQPTPQIRTTLLRTLQRCHQIYRVFQGRMATFELYRRSEIGTCLTETLDEMVQAGTLSPEHAIQILVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDKQENVGRVKIVALVRTRGRDGRIRHAGVGRGVSIPVEQEQDIEQPVFVEQPMMQEDEDVAQHGWPGGPLDTSILTRYSDHVARYIWFGTV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02595 248 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 76 121 IPR015872 GO:0005672|GO:0006367
Tsu05g02595 248 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 67 170 - -
Tsu05g02595 248 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 76 126 - -
Tsu05g02595 248 Gene3D - 75 126 IPR009083 GO:0005672|GO:0006367
Tsu05g02595 248 Pfam Transcription initiation factor IIA, gamma subunit 132 170 IPR015871 GO:0005672|GO:0006367
Tsu05g02595 248 Gene3D - 127 178 IPR009088 GO:0005672|GO:0006367
Tsu05g02595 248 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 124 170 IPR009088 GO:0005672|GO:0006367
Tsu05g02595 248 CDD TFIIA_gamma_N 76 123 IPR015872 GO:0005672|GO:0006367
Tsu05g02595 248 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 67 170 IPR003194 GO:0005672|GO:0006367
Tsu05g02595 248 CDD TFIIA_gamma_C 129 170 IPR015871 GO:0005672|GO:0006367
Tsu05g02595 248 Pfam Reverse transcriptase-like 7 50 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02595 Tsu-Chr5 35603597 35611544 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02595 K03123 - fve:101306952 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02595 05 35603597 35611544 Tsu05g02595 05 35603597 35611544 ECH