Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02591 atggATTTTGAAACTCTTCATACAATCTTAGAAAAATCACTCACCGTCCTTTCCTGGCCTCCAATTATTTTGCTTTGTGCTTTATATGTTTCTATTAGGGCATTGGAGAGTGATTGTCGTTCCAGTAATCAACGATGTCTTGCTTTTTGggttctcttttctttctctatgATCATGGAATATGAACTTCAAATTTTACTTAGCTGGTTCCCATGGTGGCCTCATGTGAAAGCTACGGCAACTATCCTGCTGCTAATACCTTATTTTGGGGCTGCGACATACATCTACAAGTTCTTAATTAAGCACTACTTTTCGTGGAACATATGTGGATGGACATTGAACATCTTCCACCAGAAAATCACACATTTTGATTTGGACAACGATAGCAAAATACTTTCAGATTCAGATGAGGGCAGACAAGTATTTTTGGAATCGGACGATGATAGCAAAAGTGTTGAGGTCTCTGGACAGACAATTATTACTAATCATTTACAAGAGGAGAAACTCTTAGTATATCAGGGAAAAGATGATATTGCTGATTGTGACAAGACAAATACCGGTTATACAAGTAAAAAGAAAGTCCAGAAGGAATGGAGTTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAGGGTCACATCTTCAAGGGAAGCAACACAAGGCTAAGGAAAAAGAACTTCGAGTCGGGTTACATGCAACAAATATACCATATGTTCTATCCTTTACGCAGGAAAGAATGAAAGGAATGGTTCTACTTAGGAATTTCAACCAAATTGCAAAAATACTGAGTCCAGTTTCTAGACCCATAATATGGTGTGAATGGAAAAAACCGAAATTCGGATGGACAAAACTAAATACCGACGGTTCCGTAAACAAAGTAACTGCTGGTTTTGGTGGTCTGCTTCGTGATTACCGGGGCGAACCAATATGCGCATTTGTCTCCAAAGCTCCACAAGGAGATACTTTCTTGGTTGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCTATAGGTCTTGGGATTAAATCAATATGGGTGGAGTCTGATTCCATGAGTGTTGTGAAGACAATTAATAAAGTGCAACATTGTCCAAAAGCTGAAACCTGTTTGATACAAATCTGGAAACTCTTGAGTAAGGTTGATGAGTATCGGATTTCTCACTCGTGGCGCGAAACTAATAGAGCAGCAGATCATCTTGCAAAGATGGCGCTTTGTGGAAATGAATCAAATGATGTGGTTCTGTGGCCAGCTGATTTTTCACATACCCTCTGCAATATCATTCAAGATGATGCCAGAGGAATGAAATATCCAAGACGGTGA 1329 0.3837 MDFETLHTILEKSLTVLSWPPIILLCALYVSIRALESDCRSSNQRCLAFWVLFSFSMIMEYELQILLSWFPWWPHVKATATILLLIPYFGAATYIYKFLIKHYFSWNICGWTLNIFHQKITHFDLDNDSKILSDSDEGRQVFLESDDDSKSVEVSGQTIITNHLQEEKLLVYQGKDDIADCDKTNTGYTSKKKVQKEWSCALCQISTTSENCLGSHLQGKQHKAKEKELRVGLHATNIPYVLSFTQERMKGMVLLRNFNQIAKILSPVSRPIIWCEWKKPKFGWTKLNTDGSVNKVTAGFGGLLRDYRGEPICAFVSKAPQGDTFLVELWAIWRGLVLSIGLGIKSIWVESDSMSVVKTINKVQHCPKAETCLIQIWKLLSKVDEYRISHSWRETNRAADHLAKMALCGNESNDVVLWPADFSHTLCNIIQDDARGMKYPRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02591 442 Gene3D Classic Zinc Finger 183 234 - -
Tsu05g02591 442 Pfam TB2/DP1, HVA22 family 28 102 IPR004345 -
Tsu05g02591 442 Pfam Reverse transcriptase-like 288 406 IPR002156 GO:0003676|GO:0004523
Tsu05g02591 442 CDD RNase_H_like 287 404 IPR044730 -
Tsu05g02591 442 SUPERFAMILY beta-beta-alpha zinc fingers 184 231 IPR036236 -
Tsu05g02591 442 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Tsu05g02591 442 Pfam Zinc-finger of C2H2 type 198 222 - -
Tsu05g02591 442 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 11 442 - -
Tsu05g02591 442 Gene3D - 284 407 IPR036397 GO:0003676
Tsu05g02591 442 PANTHER HVA22-LIKE PROTEINS 11 442 IPR004345 -
Tsu05g02591 442 SUPERFAMILY Ribonuclease H-like 284 408 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02591 Tsu-Chr5 35520417 35524656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02591 - - gmx:100787629 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02591 05 35520417 35524656 Tsu05g02591 05 35520417 35524656 ECH