Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02562 ATGCGTGTTACAGTGGATCTAGGGTTTTCTTCGTTTTTCTTCGCGGCTTTAATTTGTGTCGTTTTGCCTGTGATTGGTTTCGTCATACGTTATAAGTGGCGGCGTGCGGCGGAGAGGGCGGAGGAGATTCAGAGATTGTTGATTCTCACGGCTGAGGAGTCTGCTAGGGCTGAGCGTGAGGCGGCAGCTTCTTATCAATATGTTGTTGCTACGAATTCGTATCAATATCAAAACGGTGCCGTTTCAGCTTCGTCTCAATATGTTTCACCGAATTCGCATGGTGCCGATTCGGTTAGTAAGAGCAATCAATGTGTAGTGTGTTTCTCTCCCACCACTACAAGGTGTGCAAGGTGCAAAGCAGTTCATTACTGTTCTGGTAAGTGCCAAATTGCTCATTGGCGTCTAGGTCACAAAGACAAATGTCATCCTCCCAGCACAGCTCGCCAGACTGATGATTTGGTAAGCGATATTAGTAAGAAGGTAGCCAAGCCAGACCGTCGTGGATTCAATGACGAGAAGTTTCGGATTGAAAGCACAGAGATTACAAAATCCTCTAAGAAACCCCCATTGTCTGATATAAAACGTTCTCCCAAATCTTCTTGTGTAGAGACTGATAATGCTAGAGTTGAGTCTCCTGCAGAGGAATATATTGCAGACTCTAATTCTGAATTATCATGTAACTCATTTTCTGGATTCTCTGCTTCCACTGGGGCTAATGGATCATCATCATCTGATGATTCATCTGTTTGTGAGAGTATTATCTCAAATGAGCATGAGAGATCCGAGGGACCTATTTGTACTGACCACACTTTTGACGTCTCTGACAACACATCAAATGGTCATAGCATCGGTGCAACCATCCCATTGTCCCCTAAGTTTGGTAGTTTGGTTGATTCTGCTAGACCTGATATTGGTAAAGAAGAGGTTAAGCTCAGAACAGAGCCTTCTAATGTGTCGTCTGGATTTTGGAATGGGACTCTTGATTCAAATGGGGTAAAAGATGACTCTTTTGGTGATCCTCTTCCATCTCACTTTAATGAATCTGTTACGAAGTCTGTTGGGAAGAATATGCCAAACGTAGGATTAGGATCTTCCAAGAATGAAGGTCTTGATTCTACTCGTTATGCAGATGCTTCAAGCACCCATAAATTGCACACTGTTGGCTCTAAGGTATCAAATCATGTTGTGATCAACCCTGGAAGCAGCTTGAGATCTGCTGAAATTTGTCGTCTTCCATGTACATCTTCCGAAACTAAGTTAGTTTCTAGAGCTGTAGAGGAGGAGCATTTACATTACGGTTCAAAATTTATGAACAATGGTACCCGTTCTGGAACTGCTAATTCATCCCAGGTTGCTAATTGCTCTCCAACTTCCAAAGATGGCCTTAAAACATCTGTTATGAAAGTTGTTGATCAGCCTAGAGGATCAAATATGTCCAAACACTTTCCAATAGATGTTGGAAGTGATGCTGCGGTAAAATACAGCGACAAGGGTCTTTTTCCATATGATTTGTTTGTCAAACTTTATAACTGGAACAGAGTGGAGGTCCAACCATTTGGTCTTGCAAATTGTGGAAACAGCTGTTATGCGAATGCTGTACTCCAGTGCTTGGTATTTACACCACCATTGACTGCATATTTGCTTCAAGGGCTTCATTCTAAATCATgtgtaaataaaaaatggtgttTCATTTGTGAGTTTGAAAGTTTGATTGTGAAGTCAAAAGACACAAAATCTCCCCTCTCACCTATAGGCATACTCTCTCAACTACAGAATATTGGAAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGACATGTGATTGAAACAATGCAATCTGTTTGTCTTATGGAATGTGAGGCTAATGCATCAGACTCATTAAAAGAACAAACTAATTTAGTGGGTCTTACATTTGGAGGCTACCTGCGATCTAAgATAAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATTTGACTGTTGAGATAGAAGGAGAGATAGCATCCTTGGAGGATGCCCTTAAACAGTTTACAAGCATTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAAATGGCAGTTTCAGAGGCACCTAATGTTCTTACAATAGCATTGAAGAGATTCcggTCTGGAAAATATGGGAAGCTCAATAAGCCAATTCGGTTTCCTGAAATACTTGACTTAGCTCCTTTCATGAGTGGAACTAGTGATTTGGCTATATACAGGCTGTACGGGGTCGTTGTGCACTTGGATACAAGGAACGCTTCTTATTCAGGTCACTATGTGTGTTATGTGAAGAATTTCCAGAACAGTTGGTTCAAGATTGATGACAGTGTGGTGACGCCTGTTGAATTGGAAACAGTCTTAACAAAAGGCGCATACATGCTTCTTTATGCTAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGGATATGATAGTGTCCTCCGATTCAAAAACCAAACTGAATGGAAAAACTATCATAATGAAGTACAAACATGCATCAACACATTCTGGTTCTACTGAATACATGACTAATTCAGTTTCTACTACACATGGTTTACCTGCCTTAGAGACAATCAATTCGAAGTTCCATCGCATGAAAAGTATCATGGAAGAAGACTCATCAAGTGATAATTCGTCCCTCTTCAGCAATAATTCAGACGATTGTTCTTGCAGCACCGATAGCACTTGTGATTCAACAAGTACCGATGAATTTGCAGATTATATTTTTGGTAATTCAGGACGAGGTGGGGGCGGCACTTCCTCTACATGTTCAAGGGTGGGGATAGACGGTCTTTTGTATAGTAGACCGGCAGACGTTGAAAGGGGTGAGAGATGTGTTTCTCATTTGCATCATAACACAAGTATAGAGCATAAGTTAGATACATGTAGGAGTAGTTTTAGGCAGAGTAATTCTTTTGAGAGAGCAAAATCCaatgatttttatataaattctGGTGTAACACATAGAAAGTCAAGAGAAAGAAAGGATTGA 3063 0.4058 MRVTVDLGFSSFFFAALICVVLPVIGFVIRYKWRRAAERAEEIQRLLILTAEESARAEREAAASYQYVVATNSYQYQNGAVSASSQYVSPNSHGADSVSKSNQCVVCFSPTTTRCARCKAVHYCSGKCQIAHWRLGHKDKCHPPSTARQTDDLVSDISKKVAKPDRRGFNDEKFRIESTEITKSSKKPPLSDIKRSPKSSCVETDNARVESPAEEYIADSNSELSCNSFSGFSASTGANGSSSSDDSSVCESIISNEHERSEGPICTDHTFDVSDNTSNGHSIGATIPLSPKFGSLVDSARPDIGKEEVKLRTEPSNVSSGFWNGTLDSNGVKDDSFGDPLPSHFNESVTKSVGKNMPNVGLGSSKNEGLDSTRYADASSTHKLHTVGSKVSNHVVINPGSSLRSAEICRLPCTSSETKLVSRAVEEEHLHYGSKFMNNGTRSGTANSSQVANCSPTSKDGLKTSVMKVVDQPRGSNMSKHFPIDVGSDAAVKYSDKGLFPYDLFVKLYNWNRVEVQPFGLANCGNSCYANAVLQCLVFTPPLTAYLLQGLHSKSCVNKKWCFICEFESLIVKSKDTKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRHVIETMQSVCLMECEANASDSLKEQTNLVGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEIASLEDALKQFTSIETLDGENKYHCVRCKSYEKAKKKMAVSEAPNVLTIALKRFRSGKYGKLNKPIRFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTRNASYSGHYVCYVKNFQNSWFKIDDSVVTPVELETVLTKGAYMLLYARCSPRAPRLIRDMIVSSDSKTKLNGKTIIMKYKHASTHSGSTEYMTNSVSTTHGLPALETINSKFHRMKSIMEEDSSSDNSSLFSNNSDDCSCSTDSTCDSTSTDEFADYIFGNSGRGGGGTSSTCSRVGIDGLLYSRPADVERGERCVSHLHHNTSIEHKLDTCRSSFRQSNSFERAKSNDFYINSGVTHRKSRERKD 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02562 1020 MobiDBLite consensus disorder prediction 181 207 - -
Tsu05g02562 1020 ProSitePatterns Zinc finger MYND-type signature. 104 141 IPR002893 -
Tsu05g02562 1020 SUPERFAMILY HIT/MYND zinc finger-like 100 143 - -
Tsu05g02562 1020 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 952 1003 - -
Tsu05g02562 1020 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 948 - -
Tsu05g02562 1020 Pfam Ubiquitin carboxyl-terminal hydrolase 519 820 IPR001394 GO:0004843|GO:0016579
Tsu05g02562 1020 MobiDBLite consensus disorder prediction 436 456 - -
Tsu05g02562 1020 Gene3D Cysteine proteinases 512 832 - -
Tsu05g02562 1020 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 948 - -
Tsu05g02562 1020 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 952 1003 - -
Tsu05g02562 1020 Pfam MYND finger 104 141 IPR002893 -
Tsu05g02562 1020 SUPERFAMILY Cysteine proteinases 515 826 IPR038765 -
Tsu05g02562 1020 MobiDBLite consensus disorder prediction 181 201 - -
Tsu05g02562 1020 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 519 823 IPR028889 -
Tsu05g02562 1020 ProSiteProfiles Zinc finger MYND-type profile. 104 141 IPR002893 -
Tsu05g02562 1020 MobiDBLite consensus disorder prediction 348 372 - -
Tsu05g02562 1020 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 520 535 IPR018200 GO:0004843|GO:0006511
Tsu05g02562 1020 Gene3D - 90 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02562 Tsu-Chr5 34878837 34886946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02562 451 827 Miscellaneous Gene Families AT4G31670 46.649 4.73e-119 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02562 K11855 - gmx:100782303 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02562 05 34878837 34886946 Tsu05g02562 05 34878837 34886946 ECH