Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02559 atgaatcactTAAGTGCTGGATTGGCTCAGGGCTTAAGTGATGTTTCTATGCCTTATCCTAAGTCTCAGCCTACACCACCAGAACATCTTTCTTCTCATGGTAGAAATGGCAATAAGGTTTACAAGAGAGGGCCGCTTTTCATATCTTCCAAAGGAGGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCaAATGTTGTTTCTCAAAAGGGAAATGAAGTGAATTTGACTCTTGGTGGCATTGACCTCAACAGTTCAGGCAGTGTTTCAGTCAAAGCAGATAAGAAACTTTTGAATGTACAATTTTCTGATGGACGAGTATTCACACTAAAGGCTGAAACTACCGAGGATTTATATGAATGGAAAACTGCACTTGAGAATGTTATGGCACATGCACCAAGTGCTACTAATGTGATGGGGCAAAGTGGTATCTTTAAGAGTGATCAGGCTGATTCACTCGGTATCTATTTAGACCAGTTGAAGGATAAAGAAACAGTAAAATATGCAGTCCTTGGCCGGCCAGTTTTACTTGCTTTGGAAGAAGCTGATGGAACTCCATCTTTTTTGGAAAAAGCCCTGAGGTTCATAGAAGAGCATGGAGCCAAAGTAGAAGGGGTCTTGCGGCAAGCAGCCGATGTTGAAGATGTTGAAAATCGAGTGCGGGAATATGAACAAGGAAAAGTTGAATTCTCTGAGGAGGAGGATGCACATGTTGTTGCTGATTGTATTAAGCTTGTAATTCGTGAGTTACCGTCTTTTCCAGTCCCAGCATCTTGTTGTAAGGCGTTGTTAGAAGCTTCTCGAACTGCACGTGGGAATAGAGTTTCTGCTATGCGTGCAGCAATATGCGATACTTTTCCTGAACCAAACCACCGTTTGTTGCAAAGACTACTCCTGATGATGCAAGCAGTCGCTTCCCGAAAAGCTGAGAACAGAATGAGCTCATCAGCTGTGGCAGCATGCATGGCACCATTGCTTCTTCGGCCCCTTCTAATTGGGGATTGTGAGATTGAAAATGATTTCGATGTAGGTGGGGATGGTTCCATTCAACTTCTACAAGCAGCTGCTGCTGCTAACCATGCTCAAGCAATTGTTATTACTTTATTAGAAGAATATAACAACATATTTGAGGAAGGTTCTTCGTCACCCGGCCCTGATATGTACATGGATTCagaagatgatgaatctgaGAGTGAGGAGGCTACTGATGATGATTTGTCCTATGATGATTCTTATGATGATGAGCATGATGAATCAATAGAGGGGTCTGATGTAGATGAAGATCTTGTTAGTGAAATCAACAACGAGACCGAAGACTCTGCAGTCAATGATGAATATAATGATAAGGACCATAATATTTCATATTCAAGTTCAAAGTCCTCAAAGGTAAGTGATTATCTTGAAGTTGACCAAAGGTTATCAACAATGTCACTTGAAGTCTCATTACCTCTGTCTGAAGATATCAAAAGCTGTGAAAATTTTGCAAGCCAAAATAACACTGCTTGTGCAAAGTCCTGTGAAAATTTCACAAGCCAAAATAAGATTGCTTCTGCAAATGACTCCACTAAGCCCACTGATATGATTGAAGGCTTATCTCCTGACCAAACTACAGTGAATCAATCAAATTCTCCTAACTCTACTTCATGTATGAACAAATCTAATGGAAGAATGCAACGGCGCCGCACTGTTTTGAGGCGAAACTCTGGAAGCAAGAACCTTTCCATGGAATCCATTGATTTTCTAGATGATAATGAAGCTGAAGTTGAGAGGCTTGAAGCTGTTATGACAGAATTGCAATGCCAAATTGCAGAGGAGGTAAAAGTAAATGCAAAGCTGCAATCTTACGTGGAAACCCGAAAAGAAGCCTTGCAAGAGCGTCGTCTGGTTCTTGAGCGAAATGTTGGTAAACTACATGAACAGTTGCTCAAGGAGAAGAACTTTAGGGCAACTCTGGAAGCAGGACTAAAGTTTACTCCAGGGACATTATCTGGATTATCTGATATTGACGAAAAGACCAAGACAGACTTTCAGGAATTAGTGTTGATAGAAGCAGATCTTTCCAACTTAGAATGGAAGGTTAATGAGCTTGGATTACGGCTTAATGCACAACTTGAATGGAATTATGGTTCCATGCAGATATCAAGCCATGAAAGAAATTTGAAGAATAGGCCAAATACTGAATTTTCAGCCATTTCAGAATCTGACAGATCAATAAGAAAGCAGGATAGTCATTTTGGTGGAGCAGAaaatgagaatgagagaaaatcagAGTCAACACCTTCACCAAACAAACAACCACCTAGTTCCAAGAAATCTGTTACAAGGGTTGAGGGAGCAAATTCCACTACTTCTGCAATTACAAAACTGACGTCCAAATTAAACTTTTTGAAGGATCGTCGTAGTCAGTTTTCTAGTGAACTTCGAaacataaataaagaaaaaggatTTGAACTTCAGCTTCCACCTCCATCTCCCAACAGGTATCGAGGATTTGATTTTCACATACCTCTTCGATCCCCAAATAAGTCTCGAGGAAACGAACGACACTCACCACTTTCATCCCCCAATAAGTATCGAGGGTGTGAATTTTACATATCTCTTATATCTCCAACTAAGTCTCGAGGATATGAAAATAATTCTCCACCAAACCCTGAGAAAGTTAGAGGCAATGAAGATCATTCACTTGGATATTCAGAGAAATTGAGAAAATAA 2754 0.3943 MNHLSAGLAQGLSDVSMPYPKSQPTPPEHLSSHGRNGNKVYKRGPLFISSKGGIGWTSWKKRWFILTQTSLVFFRSDPNVVSQKGNEVNLTLGGIDLNSSGSVSVKADKKLLNVQFSDGRVFTLKAETTEDLYEWKTALENVMAHAPSATNVMGQSGIFKSDQADSLGIYLDQLKDKETVKYAVLGRPVLLALEEADGTPSFLEKALRFIEEHGAKVEGVLRQAADVEDVENRVREYEQGKVEFSEEEDAHVVADCIKLVIRELPSFPVPASCCKALLEASRTARGNRVSAMRAAICDTFPEPNHRLLQRLLLMMQAVASRKAENRMSSSAVAACMAPLLLRPLLIGDCEIENDFDVGGDGSIQLLQAAAAANHAQAIVITLLEEYNNIFEEGSSSPGPDMYMDSEDDESESEEATDDDLSYDDSYDDEHDESIEGSDVDEDLVSEINNETEDSAVNDEYNDKDHNISYSSSKSSKVSDYLEVDQRLSTMSLEVSLPLSEDIKSCENFASQNNTACAKSCENFTSQNKIASANDSTKPTDMIEGLSPDQTTVNQSNSPNSTSCMNKSNGRMQRRRTVLRRNSGSKNLSMESIDFLDDNEAEVERLEAVMTELQCQIAEEVKVNAKLQSYVETRKEALQERRLVLERNVGKLHEQLLKEKNFRATLEAGLKFTPGTLSGLSDIDEKTKTDFQELVLIEADLSNLEWKVNELGLRLNAQLEWNYGSMQISSHERNLKNRPNTEFSAISESDRSIRKQDSHFGGAENENERKSESTPSPNKQPPSSKKSVTRVEGANSTTSAITKLTSKLNFLKDRRSQFSSELRNINKEKGFELQLPPPSPNRYRGFDFHIPLRSPNKSRGNERHSPLSSPNKYRGCEFYISLISPTKSRGYENNSPPNPEKVRGNEDHSLGYSEKLRK 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02559 917 SMART RhoGAP_3 197 387 IPR000198 GO:0007165
Tsu05g02559 917 MobiDBLite consensus disorder prediction 13 37 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 402 455 - -
Tsu05g02559 917 Coils Coil 595 622 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 747 772 - -
Tsu05g02559 917 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 16 828 - -
Tsu05g02559 917 CDD PH 42 139 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 773 795 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 885 917 - -
Tsu05g02559 917 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 16 828 - -
Tsu05g02559 917 Gene3D Rho GTPase activation protein 170 392 IPR008936 GO:0007165
Tsu05g02559 917 Coils Coil 807 827 - -
Tsu05g02559 917 Coils Coil 634 654 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 900 917 - -
Tsu05g02559 917 Gene3D - 29 145 IPR011993 -
Tsu05g02559 917 SMART PH_update 40 146 IPR001849 -
Tsu05g02559 917 CDD RhoGAP 200 353 - -
Tsu05g02559 917 ProSiteProfiles PH domain profile. 39 144 IPR001849 -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 391 476 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 729 746 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 885 899 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 547 571 - -
Tsu05g02559 917 Pfam Leucine-zipper of ternary complex factor MIP1 637 717 IPR025757 -
Tsu05g02559 917 Coils Coil 227 247 - -
Tsu05g02559 917 Pfam PH domain 41 143 IPR001849 -
Tsu05g02559 917 SUPERFAMILY PH domain-like 20 142 - -
Tsu05g02559 917 ProSiteProfiles Rho GTPase-activating proteins domain profile. 191 390 IPR000198 GO:0007165
Tsu05g02559 917 MobiDBLite consensus disorder prediction 729 795 - -
Tsu05g02559 917 SUPERFAMILY GTPase activation domain, GAP 198 392 IPR008936 GO:0007165
Tsu05g02559 917 Pfam RhoGAP domain 200 343 IPR000198 GO:0007165
Tsu05g02559 917 MobiDBLite consensus disorder prediction 828 872 - -
Tsu05g02559 917 MobiDBLite consensus disorder prediction 547 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02559 Tsu-Chr5 34842367 34860271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02559 - - cam:101498807 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02559 05 34842367 34860271 Tsu05g02559 05 34842367 34860271 ECH