Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02530 ATGGATAGCATAATGAACAAGCTTCGGAATCTTGATGCATATCCAAAAATCAACGAAGATTTTTATAGTCGCACGCTTTCTGGCGGTGTTATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTTTTCTTCTCCGAGCTTCGGTTATATCTTCATGCTGCAACTGAAACTAAGCTTGTTGTAGATACTTCTAGAGGAGAAACGCTTCGTATCAATTTTGATGTTACATTTCCTGCACTAGCATGTTCTATACTTAGTCTCGATGCCATGGACATAAGCGGAGAGCAGCATTTGGATGTAAAACATGATATAATCAAGAAAAGAATAGACTCTCACGGTAATGTGATAGAAACAAGGCAAGATGGAATTGGTTCTCCCAAGATTGAAAAACCCTTGCAAAAACATGGAGGCAGGCTTGAGCACAATGAGACTTATTGCGGATCCTGTTATGGGGCTGAGTCGTCAGACGAGGAATGTTGTAATTCCTGCGAGGAAGTTCGTGAAGCATATCGAAAGAAAGGCTGGGCACTCTCAAACCCGGATGTAATTGACCAGTGCAAAAGAGAAGGATTCTTAGAAAGAAtcaaggaagaagaaggtgaaGGATGCAATGTGTATGGCTTCTTGGAAGTAAACAAGGTGGCAGGGAATTTCCATTTTGCTCCTGGGAAAAGCTTTCAGCAATCTGGTGTACATGTGCATGACCTGCTGTCTTTTCAAAAGGAATCATTTAATTTAAGTCACCACATCAACAGAGTAGCCTTTGGTGACTATTTTCCCGGTGTCGTAAACCCTCTTGACCGTGTGCATTGGACGCAAGAATCACCAACTGGGATGTATCAGTATTTTATTAAGGTTGTGCCAACTATGTACACTGACGTGAATGGGAACACTATCCAGTCAAATCAGTTCTCTGTGACAGAACACTTCAGGACTGGAGATGTAGGCCGATTGCAGTCCCTTCCTggagtttttttcttctatgaCCTTTCTCCAATTAAggtgGTTACTTTTACAGAAGAAAATGTctcatttttgcattttcttACTAATGTGTGCGCCATAGTTGGAGGTGTTTTCACCGTTTCTGGAATACTAGATTCATTCATCTATCATGGCCAAAAGGCTATCAAGAAAAAGATGGAACTCGGTAAATTTAGCTGA 1164 0.3952 MDSIMNKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFFSELRLYLHAATETKLVVDTSRGETLRINFDVTFPALACSILSLDAMDISGEQHLDVKHDIIKKRIDSHGNVIETRQDGIGSPKIEKPLQKHGGRLEHNETYCGSCYGAESSDEECCNSCEEVREAYRKKGWALSNPDVIDQCKREGFLERIKEEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLSFQKESFNLSHHINRVAFGDYFPGVVNPLDRVHWTQESPTGMYQYFIKVVPTMYTDVNGNTIQSNQFSVTEHFRTGDVGRLQSLPGVFFFYDLSPIKVVTFTEENVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKKKMELGKFS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02530 387 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Tsu05g02530 387 Pfam Endoplasmic reticulum vesicle transporter 149 367 IPR012936 -
Tsu05g02530 387 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 2 386 IPR045888 -
Tsu05g02530 387 PANTHER ENDOPLASMIC RETICULUM VESICLE TRANSPORTER PROTEIN 2 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02530 Tsu-Chr5 34421040 34434828 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02530 K20367 - gmx:100782309 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02530 05 34421040 34434828 Tsu05g02530 05 34421040 34434828 ECH