Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02511 atgaacaacaacaacaacagaaaaGATAATGAACTTGTTGGTAAAAGAACAAGGTTCATCATGAACAACAATAACACCACCAACGCTGTTTCTGATGATGATCTCACTGTTCCATCATTActccatcaacaacaacaacaacaatcatcTCTCATGTCGTCTCATCAGGTTCAACAACAGCATCAATCTTCTTCTCCTTTTAACCCTCAACCTCAAGGAGGGTTTCATTTTTGGGGAGATGAAACCATGATCAACAATAACAATAGCAACAACAACTGGAATACTCATCATGATCATGATCATCATCAATTGTCTCTTGATCTTTCTGCAATGACCCTTTTGGATGAagatcataatcataatcatcatcatcatcaacctaacaacatcaacaacaacaacagcattACCAGAATCAGAGGTAATAACAATCTTGCTGACTCAATCACAAACATGAACATGCCTCCTTTTTGGGAATCTCATGCatacaacaataataacaacaacaacaacaaaaacaacattgttGAAGATGAAACTGTAACAGCAACAGCAACACACCCACGTTATCAAAACATGGGTACTCCAAAATCAACTTTTGGGGTTTCACCTTCACAAGGTTTAGTCTCTGATATGAAATGGGGTATGCAAAAAGGTCACACCTTTGGTGGAGTTTCTCAAATGGGTTCTTCCATTGATCTTGGAAACAATGTTTCTTATGGTCATGGTCAGGGACATACTGGACTTGGACATGGACTTTGTTATGGACATGGTAGAGGTAGAGTTGTTCCAGTTCAGCTTCAAAACCCATCTTTCTATTCATCTTATAACCCTTATGAACAACGTCCTACTGTGTATCCTTCACCAAGAGGATCTTCTTTTGTTATGGAAAATGATTTAGGATGGGATGTTGCAACAAATAATCCTATCATGTACACTACTCCAAATGTAAACAATGCAGCAGCACCAGCACCAGTTCCTTCACCGCAACAACTTTATTATCCTTCTAATAGGCATTTTCAACTTCCTCAATCTCTTTATCCTACTAGACCTATTGAGGAACCTGTGGCTTTTAAATGTGATAGTAGTTTTATCTTTCAAGAAAATGACATGAAAAATGAGTGCAATAACTCATCATTGTTGGGTGGTAGAAAATTTCCATACTCACAAGAAGGAGTGattcctcaaatttctcattttccttgtaaaagtgaaaatagtagaaattttgtaactgataatgatgatgatgatggtggttaTGATGATGTACAACAAAATTTGATGAACTTTGGTTCTTCTAGTTTTCCTGAGCTACAAAGTTATATGCTTCATATGGCAAGGGATCAAAATGGTGGTCGTTTTCTGCAGGGATTGGTTGAGAAAGGGAGAGTTGAAGATATGGAAGTTGTGTTTAATGGAGTTATTGATAATGTTGTTGATCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAGAAATTGCTGGAGTTTTGTAGGGATGAACAGAGATTGCAGATTGTTCTTATGTTGACTAAAGAACCTGGTCAGCTAGTCAGAACCTCTTTTAACACACATGgCACAAGAGTGGTTCAGAAGCTGATTTCTACTCTCAAATCAAGAAGGCAAATTGCATTAGTAAGGTCTGCAATTCAACCTAGTTTTCTTGATCTAGTTAAGGACCTGAATGGAAATCATGTCATACAACGTTGCTTGTCATCTTGGAGTGTTCAAGATAATGAGTTTATTTTTGATGCTGCAATAAAGTTCTTACTTGATGTTGCTACTCATCAACATGGCTGCTGTGTGCTTCAACGCTGCATTGATTTCTCAAAGGGAAAAAGTCTAGAAAAGCTTGTCAAAGAAATTTGCAAATATGGCTTTTCCCTAGCTCAAGATCCATATGGAAATTATGTTGTTCAGTACATTATCCAGATGCAAATTCCAAGTGCCATAGCCAAACTTACTCCTCAGTTCAAAGGGAACTATGTACTCCTCTCCACACAAAAATTTAGCAGCCATGTGGTCGAAAAGTGCCTCGAATTTATTGTAGAGGCTAGAGCAAGGATTGTCCAAGAATTGCTTTCTGTTCCTCAATTTGAGCGTCTTCTGCAAGACCCTTATGGCAACTATGTCGTTCAACGTGCTCTAGAATTCACCAAGGGCTCTTTGCATGCATCTTTGGTTGAAGCAGTTAGAGCCCACAAAATGTTGCGTACAAGCCCATATTGCAAGAGGATTTTCTCAAAAACCCAGTTTAAGAAGTGA 2268 0.347 MNNNNNRKDNELVGKRTRFIMNNNNTTNAVSDDDLTVPSLLHQQQQQQSSLMSSHQVQQQHQSSSPFNPQPQGGFHFWGDETMINNNNSNNNWNTHHDHDHHQLSLDLSAMTLLDEDHNHNHHHHQPNNINNNNSITRIRGNNNLADSITNMNMPPFWESHAYNNNNNNNNKNNIVEDETVTATATHPRYQNMGTPKSTFGVSPSQGLVSDMKWGMQKGHTFGGVSQMGSSIDLGNNVSYGHGQGHTGLGHGLCYGHGRGRVVPVQLQNPSFYSSYNPYEQRPTVYPSPRGSSFVMENDLGWDVATNNPIMYTTPNVNNAAAPAPVPSPQQLYYPSNRHFQLPQSLYPTRPIEEPVAFKCDSSFIFQENDMKNECNNSSLLGGRKFPYSQEGVIPQISHFPCKSENSRNFVTDNDDDDGGYDDVQQNLMNFGSSSFPELQSYMLHMARDQNGGRFLQGLVEKGRVEDMEVVFNGVIDNVVDLMMDPFGNYLVQKLLEFCRDEQRLQIVLMLTKEPGQLVRTSFNTHGTRVVQKLISTLKSRRQIALVRSAIQPSFLDLVKDLNGNHVIQRCLSSWSVQDNEFIFDAAIKFLLDVATHQHGCCVLQRCIDFSKGKSLEKLVKEICKYGFSLAQDPYGNYVVQYIIQMQIPSAIAKLTPQFKGNYVLLSTQKFSSHVVEKCLEFIVEARARIVQELLSVPQFERLLQDPYGNYVVQRALEFTKGSLHASLVEAVRAHKMLRTSPYCKRIFSKTQFKK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 550 585 IPR001313 GO:0003723
Tsu05g02511 755 MobiDBLite consensus disorder prediction 40 71 - -
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 513 548 IPR001313 GO:0003723
Tsu05g02511 755 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 34 755 - -
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 474 510 IPR001313 GO:0003723
Tsu05g02511 755 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 34 755 - -
Tsu05g02511 755 SMART pum_5 438 473 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 513 548 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 658 692 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 622 657 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 586 621 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 474 509 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 550 585 IPR001313 GO:0003723
Tsu05g02511 755 SMART pum_5 695 730 IPR001313 GO:0003723
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 730 IPR001313 GO:0003723
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 622 657 IPR001313 GO:0003723
Tsu05g02511 755 Gene3D - 422 754 IPR011989 -
Tsu05g02511 755 CDD Pumilio 446 750 IPR033712 GO:0003723
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 438 473 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 592 624 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 629 644 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 478 508 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 705 722 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 555 585 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 520 538 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 662 695 IPR001313 GO:0003723
Tsu05g02511 755 Pfam Pumilio-family RNA binding repeat 443 473 IPR001313 GO:0003723
Tsu05g02511 755 ProSiteProfiles Pumilio RNA-binding repeat profile. 586 621 IPR001313 GO:0003723
Tsu05g02511 755 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 416 755 IPR033133 GO:0003723
Tsu05g02511 755 SUPERFAMILY ARM repeat 433 751 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02511 Tsu-Chr5 34220235 34224283 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02511 - - mtr:MTR_5g063650 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02511 05 34220235 34224283 Tsu05g02511 05 34220235 34224283 ECH