Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02501 ATGTCAAGTGGTGGATGTAGCATAGTATGGTTCAGAAGAGATCTGAGAGTTGAAGATAACCCTGCACTTGCTGCAGGTGTTAGAGCTGGTGCTGTAGTTGGTGTTTTTATATGGGCACCTGAAGAAGAAGGTCAATATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAAAATAGTTTGTCTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACGAAAAGATCAACTGATAGTGTTTCTTCTTTACTTGAAGTTGTTAAATCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATAGAGCAAAGGAAATTCTAACAGCACAGGGCATTACCGTACGTTCATTCAATTCGGATTTATTGTATGAACCATGGGATGTGAATGATGAACATGGACATCCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTACCACCTAAAAGAATTATTCCTGGTGATGTATCAAGGTGTCCTTCTGATACATTGGTGTTTGAAGATGAATCAGAGAAAGCAAGCAACGCACTTCTTGCTCGAGCGTGGTCACCAGGATGGAGCAACGCAAACAAGGCATTAACAACATTCATAAACGGTCCATTGATCGAGTACTCGAAGAATCGCAGGAAAGCAGACAGTGCCACAACCTCATTTCTCTCTCCGCATTTGCATTTCGGAGAAGTTAGTGTCAAGAAAGTGTTCCATCTTGTCCGAATTAAGCAAGTCTTTTGGGCAAACGAAGGAAACCAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTCCTTGGACATCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGGACAGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGCTTCATGATCGAATACGTGTTGTGGTTTCGAGTTTCTTTGTGAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTACCTGATGGTCGCGAATTTGACAGAATTGATAATCCACAGTTTGAGGGATACAAATGTGATCCAAACGGAGAATACGTGCGGCGCTGGCTACCTGAGCTTGCAAGATTACCAACCGAATGGATACATCATCCATGGAATGCACCAGAATCAGTACTCCATGCTGCAGGTATTgaacttggatcaaactaccCTCTTCCAATTGTGGAAATAGATGCAGCAACAGTGAGACTTGAAGAAGCACTTATACAAATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAGCAGAAAACGGAACCGAAGAAGGTCTTGGTGACTCATCTGAATCAGCTCCTATTGCTTTTCCTGAAGACATACAAATGGAAGAAAGACCTGAACCTGTTAGGAACAATCCACTTCACGGTACTAGGCGCTACCAGGATCAAATGGTACCGAGTATGACTTCTTCTAGGGTGAGAGTGGAAGAGGAAGAAACTTCTTCAGTTCGAAACTCGGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCACAGCAAAATGCAAGAGAGGTGTTGAACCAAGGAGTGTTGCAGAATGCAAATAGAAACACTAGACAAAGGCATAATAATACTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCAACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGAGGTGTAGTTCCAGAGTGGTCACCACCGACTTCTAACTTCTCAGATCAATTTGTAGATGATGAAAATGGTATAGGTGCCACTTCTCCTTACTTGCAGAGGCATCCGCAATCTCACCAATTGATGAGTTGGACACGCCTACCTCAAACTGGATGA 2049 0.4236 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLSHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDEHGHPFTTFDAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRAAAENGTEEGLGDSSESAPIAFPEDIQMEERPEPVRNNPLHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAQQNAREVLNQGVLQNANRNTRQRHNNTTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPPTSNFSDQFVDDENGIGATSPYLQRHPQSHQLMSWTRLPQTG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02501 682 MobiDBLite consensus disorder prediction 610 682 - -
Tsu05g02501 682 Pfam Blue/Ultraviolet sensing protein C terminal 510 627 IPR020978 -
Tsu05g02501 682 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Tsu05g02501 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Tsu05g02501 682 MobiDBLite consensus disorder prediction 522 573 - -
Tsu05g02501 682 MobiDBLite consensus disorder prediction 534 548 - -
Tsu05g02501 682 Gene3D HUPs 8 206 IPR014729 -
Tsu05g02501 682 PANTHER CRYPTOCHROME-1 1 600 - -
Tsu05g02501 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Tsu05g02501 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Tsu05g02501 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Tsu05g02501 682 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Tsu05g02501 682 MobiDBLite consensus disorder prediction 661 682 - -
Tsu05g02501 682 PRINTS DNA photolyase signature 352 370 IPR002081 -
Tsu05g02501 682 PRINTS DNA photolyase signature 332 348 IPR002081 -
Tsu05g02501 682 PRINTS DNA photolyase signature 391 405 IPR002081 -
Tsu05g02501 682 Pfam DNA photolyase 7 163 IPR006050 -
Tsu05g02501 682 Gene3D - 134 293 - -
Tsu05g02501 682 Pfam FAD binding domain of DNA photolyase 283 479 IPR005101 -
Tsu05g02501 682 PANTHER CRYPTOCHROME 1 600 IPR002081 -
Tsu05g02501 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02501 Tsu-Chr5 34034149 34040552 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02501 K12118 - gmx:100786551 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02501 05 34034149 34040552 Tsu05g02501 05 34034149 34040552 ECH