Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02488 atGTCTCTCTCTTCAACTTCAAACTCTCTCATTCCAACCAAATCATTAATTCCACAACAACCTCATTCCACTATCACCAACCAAACCTCATTTCCAATCGGGCTAAAacccaagcccaagcccaatTCAATCGTCGCCGTCCACGCAGCTGAGCCAGCAAAAAACCCAGTTGTAACTGAAAAACCGTCAAAACCTCAACCAACAACCATTCCTCGTAATGTCGCTTCCACAAAATGGACAATCGATAGCTGGAAATCGAAGAAGGCTTTACAGCTTCCAGAGTACCCTAATCAGGAGGAACTTGAAGCGGTTCTCAAAACTCTTGATGATTTCCCTCCGATTGTTTTCGCTGGTGAAGCTAGAACTTTGGAGGAACATTTGGGTGATGCTGCTATGGGAAACGCGTTTCTTCTTCAGGGTGGTGATTGTGCCGAAAGTTTTAAGGAGTTTAATGCCAATAATATTCGTGATACTTTCAGAATTATTCTTCAGATGAGTGTTGTTATGATGTTCGGTGGTCAAATGCCGGTTATTAAGGTGGGGAGAATGGCGGGTCAATTTGCAAAGCCAAGATCGGATAATTTTGAGGAGAAGAATGGTGTGAAGCTTCCGAGTTACAGAGGGGATAACATCAACGGTGATACGTTTGATGAGAAATCAAGGACTCCGGATCCTCAGAGGATGATTCGTGCTTATTGTCAAGCTGCAGCTACTCTGAATCTTCTCAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGGGTTACTCAATGGAATTTGGATTTCACTGAACAAAGTGAGCAAGGAGACAGATACCGAGAGCTTGCTAACCGAGTAGATGAGGCCCTGGGATTCATGGCTGCTGCTGGGCTCACAGTTGACCATCCAATAATGAGAACAACTGATTTCTGGACATCTCATGAATGCTTGTTATTGCCATATGAACAATCGCTCACTAGATTGGATTCAACTTCTGGTCTCTATTATGACTGCTCGGCCCATATGATTTGGGTTGGTGAAAGGACCAGGCAGCTGGATGGTgcccatgttgaatttcttagAGGAGTTGCCAATCCTTTGGGAATCAAGGTAAGTGACAAGATGGACCCAAATGAGCTTGTTAAACTCATTGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATTACTATTATCACTAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTAATCAGGGCTGTGCGCAGGGCGGGACAAATTGTGACATGGGTCAGCGATCCTATGCATGGAAACACCATTAAGGCTCCATGTGGTCTTAAAACTCGCCCCTTCGATGCCATCAGGGTACATAATTCTCGTCACTCACTCTTTTTTAGTTGGTTACACGTTGCTTTCGAgtatctaaaatatatatatttttttttttacaatatccAAAATATCTTAATCAtcatataa 1452 0.4146 MSLSSTSNSLIPTKSLIPQQPHSTITNQTSFPIGLKPKPKPNSIVAVHAAEPAKNPVVTEKPSKPQPTTIPRNVASTKWTIDSWKSKKALQLPEYPNQEELEAVLKTLDDFPPIVFAGEARTLEEHLGDAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDNFEEKNGVKLPSYRGDNINGDTFDEKSRTPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEQSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRVHNSRHSLFFSWLHVAFEYLKYIYFFFYNIQNILIII 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02488 483 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 5 448 IPR002480 GO:0003849|GO:0009073
Tsu05g02488 483 SUPERFAMILY Aldolase 68 446 - -
Tsu05g02488 483 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g02488 483 Pfam Class-II DAHP synthetase family 79 445 IPR002480 GO:0003849|GO:0009073
Tsu05g02488 483 Gene3D Aldolase class I 261 450 IPR013785 -
Tsu05g02488 483 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 5 448 - -
Tsu05g02488 483 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02488 Tsu-Chr5 33715448 33720008 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02488 K01626 - gmx:100797019 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02488 05 33715448 33720008 Tsu05g02488 05 33715448 33720008 ECH