Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02168 ATGAAATCTACGGTTGAAGGTTCCATGGTAGCTGAAAGATTTGATGatggagaaaaacacaagaagaagaACCGTCGATCTAATCGTCGAAACAAGCAGAATCCTCTCTCATCTTCAGGGTTAGTATCTGAAGTAAATGAGGCCATTGGGGTGTCTTCCGAATGCTCTGGGAAAAATGGAACACCCACTCAATCATCTGGATCCTTTAGCAATTCactgaagcagcagcagagtgTTATTGTTTTCCCCTCTAATGAGCAAGAGTTATCCAAAGCACCAATTGTTGAATCCATTTCGGTGCCTCTTAATGATCAAGGAATACCTGTTGATTTGCAAAACATGCGAATACATGAAGGAGGAATTGTTTCAAAACCATTTTTGGAACCCATCGGCTGCTTAGGATCATCAGCAACATTTAAAAAGAACGACTCTTCCCCTTACAGTGAAATTGGTCTTTCTGGCCAGCGAAATTATTTTAGTCCACATTGGCATGTAGAGGCTGTTGAGAAGGCATTGGAGAGGGGTGATGTTTTCAAAGCTGTCTTTCGTGTCAATGCTCACAATAAACTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACAGATATTCTCATTGGTGGGGCTCCAGCCCAGAATAGAGCTGTGGAAGGTGATGTGGTTGCAATTAAGATTGATCCTTTGCCATCTTGGACAAAAATGAAAGGACCAAATGTGACCAACAACAATACTGCAGTACTGGAAGGTTGTAACCTTGTGGAAGGTAATGTTGTGGGTGATAACAATTGTGATGGAAACAGGAGCTGTCCTGCTCTAAGCAAGGAGGAATCTTATCCTTTTCCTGAAAAAAGTTACATTTATGAGAATAATACTACACAAGGTTTACCTAACCATTTAAGTTTAATTGGACTAACCGGCCGTGATAACAATGATGATCTTCACTATGATTCCTCTGCTTCCTTAAAGATTAATTCTTGTAGTGAACAGAGTGAAGTTATGAATGCAGTGGAGAAGTTGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGGCCAACTGGCAGGGTCATTGCTGTTATTGAGAAGTCTCCACGTCGAGAATGTATTATCGGCCATCTTAATGTGAAGCAATGGGTTTTCTTTAGGGACACAAACAAGAAAGATGCAAGAAAGAATAAGAATTTGGTGTCTGAGAATGAATATATCCAACTGAGACCAATTGATCCAAAGTTTCCTAACGTAATACTTCTGGTGAGAGAGTTACCAGAGAGCATTGCTAAAAGGCTGAAAAGTGGAGATGGAGCAATTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGTTTGAAGAAAGTCCTTTTCCTGAGGGACACATCTTGCATATTTTTGGGCGAGGCAGTGAAATTCAGCCCCAACTAGATGCTATTTTGTTTCAGAATGCAATCTGTACGTCTGAGTTTTCATCTGAGGCTGTGTCCTGCTTGCCACGTGTTCCTTGGGAGTTACCGTTAAAGGAATTACAAAATCGAACTGATCTAAGAAATTTGTGCATATTTACTATTGATCCTGTGACTGCAACTGATCTGGATGATGCACTGTCAATTGAGAAGTTGCCTAATGGAAATTATAGAGTAGGCATCCATATTGCTGATGCATCATACTTTGTTCTACCGGACACAACTTTAGATATGGAGGCAAAGTTTAGGTCAACAAGTGTTTATATGTTGCAAAAGAAGTTACCAATGTTGCCTGCATTAATCTCAGAAAATATTGGATCACTTAATCCTGGAGTGGATCGACTTGCATTTTCCATGCTCTTAGATCTGAATGTTGATGGGAATGTTGTAGACCGTTGGATTGGTCGTACTGTTATTCAATCTTGTTGCAAGCTTTCATATGAACATGCTCAGGACATCATTGACAGGGCTTTTGATTTAGAGAGTTCAAACTTTCATGAAGATGGCTATCCTAAAGTGCATGGCCATTTTGATTGGTCTGATGTTATTACTTCTTTGAAGAGTCTCTATgaaatttcaaaagttttgaaaTACAAGAGATTTACTGGTGGGGCTCTGCGGCTTGATAACCCCAAAATTGTTATCCTGTTTGATGAAAATGGCATTCCTTATGATAGTACGTTTTCTGAACAGAAAGAATCGAACTTTCTTATTGAGGAATATATGCTTTTGGCCAATACAACAGCGGCTGAAGTAATATGTAGAGCTTATCCTGATGTTGCACTATTACGGAGGCATCCTGAACCTAATATGcggaagttgagagagtttaCAGCATTTTGTCAGAAGCATGGTTTAAATTTGGACACTTCTTCATCTGGTCATATCCATTGGTCCTTAGAGAAGATAAAGGAAAAGCTCAAGGATGACCCTGTGCTTTATGATATACTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCGTCTTACTTCTGTAGCGGTGATTTTAAGGATAATGAACAGGAATGGGGTCATTATGCACTAGCTGTCCCTTTATACACTCATTTTACATCACCTTTACGTCGATATCCCGATATTGTTGTTCATCGGACCCTACTTGCTACGATAGAGGCTGAGGAAATATATTTGAAGCAGGTTGGAAAGGAAGTGGGAGTGAAAAAAAGATGTTTCACAGGCATCAACTTTGATAAAAATGCTGCAGAGACTGTTGAATGCAGGGAAGCTTTATCTGCTGCAGCTTTGAAGCATAGGGTTCCAAGTGCTGAAACACTTGCAATTATTGCTGCTTATTGCAATGATAGAAAGATAGCTAGTAGAAATGTTAAGGATGCCTGTGAGAGACTTTACATATGGTTTCTTCTGAAGCAGCAGAAGGTCATATTATCAGAAGCAAGAATATTGGGACTAGGCCCAAAGTTTATGTCAATTTATATTCAAAAGCTAGCTGTTGAGAGACGCATATATTATGATGAAGTTGATGGTTTAACTGCCGAGTGGCTTGAGGCAACATCCACGTTGGTGCTTAGCATATCTCCTAATAAGCGTGCATCTAGGAGGGGTGGCACTAACAAATGGAGATCATTGTCAGAATCTGTGTTGCTTGCTTGTCCATATGACCTGAAAGTTACAACGTATAATTCTAAACAAAACGATGCAACAGAAGTGGATGCTATTGTATCTGACATGGACAAGCAGCACATGTCCCAATCTGAAATTGAGCCTGCGTTTTTTCCACTCACTTTGCACCTTCTTTCAGCAATTCCAGTAGCACTTCATGCTGTTGGTGGTGATGACGGCCCTCTTGATTTTGGAGTGAGGTTGTACATGAGCTCCTATTTTGTGTAA 3318 0.3915 MKSTVEGSMVAERFDDGEKHKKKNRRSNRRNKQNPLSSSGLVSEVNEAIGVSSECSGKNGTPTQSSGSFSNSLKQQQSVIVFPSNEQELSKAPIVESISVPLNDQGIPVDLQNMRIHEGGIVSKPFLEPIGCLGSSATFKKNDSSPYSEIGLSGQRNYFSPHWHVEAVEKALERGDVFKAVFRVNAHNKLEAYCKIDGVPTDILIGGAPAQNRAVEGDVVAIKIDPLPSWTKMKGPNVTNNNTAVLEGCNLVEGNVVGDNNCDGNRSCPALSKEESYPFPEKSYIYENNTTQGLPNHLSLIGLTGRDNNDDLHYDSSASLKINSCSEQSEVMNAVEKLCLLVNSFPSKRPTGRVIAVIEKSPRRECIIGHLNVKQWVFFRDTNKKDARKNKNLVSENEYIQLRPIDPKFPNVILLVRELPESIAKRLKSGDGAIEMDLVAAQIDDWFEESPFPEGHILHIFGRGSEIQPQLDAILFQNAICTSEFSSEAVSCLPRVPWELPLKELQNRTDLRNLCIFTIDPVTATDLDDALSIEKLPNGNYRVGIHIADASYFVLPDTTLDMEAKFRSTSVYMLQKKLPMLPALISENIGSLNPGVDRLAFSMLLDLNVDGNVVDRWIGRTVIQSCCKLSYEHAQDIIDRAFDLESSNFHEDGYPKVHGHFDWSDVITSLKSLYEISKVLKYKRFTGGALRLDNPKIVILFDENGIPYDSTFSEQKESNFLIEEYMLLANTTAAEVICRAYPDVALLRRHPEPNMRKLREFTAFCQKHGLNLDTSSSGHIHWSLEKIKEKLKDDPVLYDILISYATRPMQLASYFCSGDFKDNEQEWGHYALAVPLYTHFTSPLRRYPDIVVHRTLLATIEAEEIYLKQVGKEVGVKKRCFTGINFDKNAAETVECREALSAAALKHRVPSAETLAIIAAYCNDRKIASRNVKDACERLYIWFLLKQQKVILSEARILGLGPKFMSIYIQKLAVERRIYYDEVDGLTAEWLEATSTLVLSISPNKRASRRGGTNKWRSLSESVLLACPYDLKVTTYNSKQNDATEVDAIVSDMDKQHMSQSEIEPAFFPLTLHLLSAIPVALHAVGGDDGPLDFGVRLYMSSYFV 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02168 1105 PANTHER RIBONUCLEASE 22 1103 - -
Tsu05g02168 1105 Hamap DIS3-like exonuclease 2 [DIS3L2]. 53 1080 IPR028591 GO:0000175|GO:0034427
Tsu05g02168 1105 Gene3D - 381 466 - -
Tsu05g02168 1105 SUPERFAMILY Nucleic acid-binding proteins 470 947 IPR012340 -
Tsu05g02168 1105 MobiDBLite consensus disorder prediction 1 43 - -
Tsu05g02168 1105 Gene3D - 152 250 - -
Tsu05g02168 1105 PANTHER DIS3-LIKE EXONUCLEASE 2 22 1103 - -
Tsu05g02168 1105 SUPERFAMILY Nucleic acid-binding proteins 351 480 IPR012340 -
Tsu05g02168 1105 SUPERFAMILY Nucleic acid-binding proteins 157 360 IPR012340 -
Tsu05g02168 1105 Pfam RNB domain 508 860 IPR001900 GO:0003723|GO:0004540
Tsu05g02168 1105 Pfam Dis3-like cold-shock domain 2 (CSD2) 399 478 IPR041505 -
Tsu05g02168 1105 ProSitePatterns Ribonuclease II family signature. 829 853 IPR022966 -
Tsu05g02168 1105 SMART RNB_2 508 862 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02168 Tsu-Chr5 27407864 27414904 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02168 K18758 - gmx:100817387 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02168 05 27407864 27414904 Tsu05g02168 05 27407864 27414904 ECH