Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02166 ATGGAGGTACTAAGAGTACAAACTATAGCTCATCAATCCAAAGAAGCAACAATACCATCCATGTTTCTAAGATCAGAAACAGAGCAACCAGGAACAACAACAGTTCATGGTGTGAAACTTGAGGTACCAATAATCGATTTCAGTAACGAAGATAAAGCAAAGttacaaaatgaaataatagaaGCAAGTAAAGAATGGGGAATGTTTCAAATTGTGAACCATGATATTCCAAatgatgttataaaaaaattacaaagtgtTGGGAAAGAGTTCTTTGAATTACCACAAGAAGAAAAAGAGGTTATTGCTAAACCTATTGGGTCTGATTCAGTGGAAGGGTATGGTACAAAGCTTCAGAAAGAGGTGAATGGGAAGAAAGGTTGGGTAGATCATTTGTTTCACATTATATGGCCAATTTCTTCCATTAATTATCGTTTTTGGCCTAACAAACCTGCTTCTTacagGGAGGTAAATGAGGAATATGGCAAGTTCTTACGTGTAGTGGCAGACAAACTATTCAAAACCATGTCAATTGGGCTTGGGCTTGAAGAACATGAACTCAAAGAAGCTGCAGGTGGAGATAATTTAATTCACATGTTGAAAATAAATTACTACCCACCTTGTCCATGCCCTGATCTCGTCCTAGGTGTTCCACCACATACAGATATGTCTTTCCTTACACTTCTTGTGCCTAATGATGTGCAAGGCCTTCAAGCCTCTAGACATGATCAATGGTATGATGTTAAGTATGTCCCTAATGCTCTCGTCATTCACATCGGCGATCAAATGGAgATAGTGAGCAATGGGAAATATAAGGCAGTGTTGCACAGAACAACGGTGAACAAAGATAAGACAAGAATGTCATGGCCAGTGTTCATAGAGCCACCGCCAGAACAAGAAGTTGGTCCTCACCCAAAGAATTGGAACTCAAGAATACAATTCAAAAGGGAACTCAGCTACAAACCCAAGTCTATAATCCAGTTTCTAACCAAGACTCAAGCTCcaattgagGCTCATTCTTTAGATAGATGGTTATGGCGGCCGGACGTGGATGGCGGATATACTGTTCGTGGTGCGTACCAGATCTTGACGGCTCAGGATGTGGTTCCATTAGATGCGGCGATAGGCCTCATTTGGCATCCTCAagttcctttgaaggtttctATTCTCGTGTGGCGTCTTTTGCGGGATAGGTTACCTACCAAAGTAAACTTGTCCTATCGAGGTATTCTACCAGTGGGGGATAGCCTTTGTGTTTCGGGCTGTGGTGCGGTGGAGTCAGCTCAGTATGTTTTTATCTCCTGTAGTACGTTCGACTCTCTATGGTCTCTTGTTCGCTCTTGGGTTGGTTCAGCTTCGGTGACATCACAGACTCTATCAGATCACTTTATCTAA 1395 0.3993 MEVLRVQTIAHQSKEATIPSMFLRSETEQPGTTTVHGVKLEVPIIDFSNEDKAKLQNEIIEASKEWGMFQIVNHDIPNDVIKKLQSVGKEFFELPQEEKEVIAKPIGSDSVEGYGTKLQKEVNGKKGWVDHLFHIIWPISSINYRFWPNKPASYREVNEEYGKFLRVVADKLFKTMSIGLGLEEHELKEAAGGDNLIHMLKINYYPPCPCPDLVLGVPPHTDMSFLTLLVPNDVQGLQASRHDQWYDVKYVPNALVIHIGDQMEIVSNGKYKAVLHRTTVNKDKTRMSWPVFIEPPPEQEVGPHPKNWNSRIQFKRELSYKPKSIIQFLTKTQAPIEAHSLDRWLWRPDVDGGYTVRGAYQILTAQDVVPLDAAIGLIWHPQVPLKVSILVWRLLRDRLPTKVNLSYRGILPVGDSLCVSGCGAVESAQYVFISCSTFDSLWSLVRSWVGSASVTSQTLSDHFI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02166 464 Pfam zinc-binding in reverse transcriptase 354 442 IPR026960 -
Tsu05g02166 464 Coils Coil 45 65 - -
Tsu05g02166 464 Pfam 2OG-Fe(II) oxygenase superfamily 197 295 IPR044861 -
Tsu05g02166 464 Pfam non-haem dioxygenase in morphine synthesis N-terminal 42 134 IPR026992 -
Tsu05g02166 464 Gene3D - 1 333 IPR027443 -
Tsu05g02166 464 SUPERFAMILY Clavaminate synthase-like 12 329 - -
Tsu05g02166 464 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 4 310 - -
Tsu05g02166 464 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 310 - -
Tsu05g02166 464 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 295 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02166 Tsu-Chr5 27378715 27389968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02166 40 293 Glycosyltransferase AT5G59530 31.439 9.04e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02166 K05278 - gmx:778157 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02166 05 27378715 27389968 Tsu05g02166 05 27378715 27389968 ECH