Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01826 ATGAGTAACAAGAGGAAGAGTGTTTTGCAGATTGAGCCTTACAAGCGCAGAATCATTCCTGATCAGGAATATAGTGACAAGACATGGAAAATTCTGGAACATGCAATTCATCAGATATACAATCACAATGCTATTGGACTCAATTTTGAAGAGCTTTACAGGAATGCTTACAATATGGTTCTTTACAAATTCGGGCAGAAACTATACTCTGGGCTGGTTTCCACCGTGACTTCTCATCTAAAAGAGATGGCTATATCTGTTGAAATTGCTGAAGAAGGCTCCTTTCTCGAAGAATTGATCAGAAAATGGAATGATCACAGTCATTCTGTTTATGGACAAGTATTTGAGACTCCTTTATTGCAAGCTTCATCTGAGTTCTATAGAGCCGAATCTCAGAAACTTATTGAGCGTTGTAATTGCGGGGATTATCTGAAGAATGTTGAGAGGCTCATAAATGAGGAAACGGATAGAGTGAACCATTACTTGGACCATGAGTCTAAAAGGGAGATTACTAATGTGCTCGTGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAGAACTCAGGGTTAGTAAACATGCTTTGTGATGATAAATATGAAGGTTTGAGTAGAATGTATAATTTGTTCGGCCGTGTTACCGATGGTCACTTGAAAATACGTGAAGTGATGAGTTCACACATCAGAGAGTCTGGTAAAGAGCTTGTTACTGATCTAGAAAGGTTGAAGGATCCTGTGGAATTTGTGCAGAGGCTCTTGGATGAGAGAGATAAATACGGCAAGATTGTAAACTTGGCATTTAACAATGACAAGTTGTTCCAGATTGCTTTGAACTCCTCATTTAAATTATTCATTAACTTGAATCCTTGTTCTCCAGAATACATTTCACTATTTGTAGATGATAAGCTTCGAAATGGTCTAAAGGGAGTTAGTGAGGATGATGTAGAGATTACTCTTGACAAGGTTATGACGCTATTCcagtatttgcaagaaaaagatATGTTTGAGAAGTATTACAAACAGCATCTGGCAAAGCGGCTTTTATCTGGAAAAACAGTTTCTGATGATGCCGAGAAGAGTCTCATAGTTAAGTTAAAGACGGAATGTGGATACCAATTTACCTCAAGTTTAGAAGTCATGTTAAGAGACATGAAAACATCTCTAGACACAATGCAAGGCTTGTATGCTAGCCATTCTGAGTTAGTTGATGGTCCTACACTTAATGTGATGGTCCAAACAACTGGGTTTTGGCCAACGCAATCTAGTGTGACATGTAACCTGCCAGCTGAAATTTCGGCACTTTGCGAGAAATTTCGGTCATATTACCTTGGCAATCATACTGGCAGGAGATTGTCCTGGTTAACTAATATGGGCATGGCAGAATTGAAAGCTACTTTTGGGGAAGGTCAGAGACATGAGTTAATTGTCTCCACTTTCCAAATGTGTGTACTCATGTTGTTTAATAATGCTGATATGCTAACCTATAGAGAAATTGAGTTAGCAACTGAAATTCCAACTTTAGATTTGAAGAGGTGTCTTCAATCTTTGGCTTTGGTTAAGGGAAGAAATGTCCTTAGGAAAGAGCCAATGAGTAAAGATGTTAATGAGAATGATGAATTCTTTGTTAATGATAACTTCAGCAGCAAATCGTATATGGTAAAAATAGGAACCGTTGCACAAAAGAAATCGGAACCAGAAACGCTGGAAACTTGGCAAAGAGTGGAGCTGGACCGGAAGCTCCAGATTGATGCATCAATAGTGAGGATTATGAAATCTAGGAAGAAAATTTATCACCACAATCTTATAGCTGAGGTCACAAAGCAATTGCAGTCACGATTCCTCGCAAATCCTACAGACGTAAAAAAACGGATTGAGTCTCTCATTGAGAGGGACATTTTGGAGAGAGATGATAGTGACAGAGAACAGTATCGATATGTTGCGTAA 1953 0.3815 MSNKRKSVLQIEPYKRRIIPDQEYSDKTWKILEHAIHQIYNHNAIGLNFEELYRNAYNMVLYKFGQKLYSGLVSTVTSHLKEMAISVEIAEEGSFLEELIRKWNDHSHSVYGQVFETPLLQASSEFYRAESQKLIERCNCGDYLKNVERLINEETDRVNHYLDHESKREITNVLVKEMIENHMLRLIHMENSGLVNMLCDDKYEGLSRMYNLFGRVTDGHLKIREVMSSHIRESGKELVTDLERLKDPVEFVQRLLDERDKYGKIVNLAFNNDKLFQIALNSSFKLFINLNPCSPEYISLFVDDKLRNGLKGVSEDDVEITLDKVMTLFQYLQEKDMFEKYYKQHLAKRLLSGKTVSDDAEKSLIVKLKTECGYQFTSSLEVMLRDMKTSLDTMQGLYASHSELVDGPTLNVMVQTTGFWPTQSSVTCNLPAEISALCEKFRSYYLGNHTGRRLSWLTNMGMAELKATFGEGQRHELIVSTFQMCVLMLFNNADMLTYREIELATEIPTLDLKRCLQSLALVKGRNVLRKEPMSKDVNENDEFFVNDNFSSKSYMVKIGTVAQKKSEPETLETWQRVELDRKLQIDASIVRIMKSRKKIYHHNLIAEVTKQLQSRFLANPTDVKKRIESLIERDILERDDSDREQYRYVA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01826 650 Gene3D Cullin Repeats 16 114 - -
Tsu05g01826 650 SUPERFAMILY Cullin homology domain 287 559 IPR036317 -
Tsu05g01826 650 PANTHER CULLIN 109 650 IPR045093 -
Tsu05g01826 650 PANTHER CULLIN-3A-RELATED 109 650 - -
Tsu05g01826 650 Gene3D Cullin Repeats 293 403 - -
Tsu05g01826 650 SUPERFAMILY "Winged helix" DNA-binding domain 562 650 IPR036390 -
Tsu05g01826 650 SMART Cullin_Nedd8_2 577 644 IPR019559 -
Tsu05g01826 650 Gene3D Cullin; Chain C, Domain 2 407 562 - -
Tsu05g01826 650 PANTHER CULLIN-3A-RELATED 4 109 - -
Tsu05g01826 650 ProSiteProfiles Cullin family profile. 293 520 IPR016158 -
Tsu05g01826 650 Pfam Cullin family 109 549 IPR001373 GO:0006511|GO:0031625
Tsu05g01826 650 SMART cul_2 323 469 IPR016158 -
Tsu05g01826 650 Gene3D - 563 650 IPR036388 -
Tsu05g01826 650 Gene3D Cullin Repeats 183 291 - -
Tsu05g01826 650 PANTHER CULLIN 4 109 IPR045093 -
Tsu05g01826 650 SUPERFAMILY Cullin repeat-like 22 291 IPR016159 -
Tsu05g01826 650 Pfam Cullin protein neddylation domain 580 642 IPR019559 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01826 Tsu-Chr5 19819828 19822922 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01826 K03869 - gmx:100794520 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01826 05 19819828 19822922 Tsu05g01826 05 19819828 19822922 ECH