Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01793 ATGAGTTCTGATAATGGATATGCTGTTGAAGTTACTGGTCTTTCACCCAACGCCACTGATAAAGATGTCTATGAATTTTTTGCTTTCTCTGGTGCTATTCACCATGTTGAAATTATAAgGTCTGGTGATTATGCATGTACTGCTTATGTGACCTTCAAAGATGGATATTCTCAAGAAACTGCATGTTTACTCAGTgGAGCCACAATTTTAGATCAACGAGTATGCATAACACGCTGGGGGCAATATGaagatgaatttgatttttggaaCAGGCCCTCTCACAGTCCTGAGGATGAGTATTCTTCAACtACACAACATAACAGTCAATTTGTTTCATCTGCTGGAGAAGTAGTTACCATGACTCAAGAAGTCGTCAAGACCATGCTAGCAAAGGGATATGTTCTTAGTAAGGATGCATTAGCCAAAGCTAAAGACTTTGATGAGTCGCATGGGGTTTCTGCCACTGCAACAGCCAAGGTTTCTGAATTAAGCCAGAGAATCGGCCTTACTGATAAGCTATCTGCTGGTTATGAAGTTGTTAAATCTGTCGATCAGAGGTACAATGTTTCTGAAACAACCAAGGCAGCTGCATCCGCAACTGGAAGATCAGTAGCCGCGGCCGCAAACTCTGTGGTAAATAGTAGCTATTTTTCAAAGGGAGCCTTGTGGATGTCCGGTGCTCTAACCCGAGCGGCTCAAGCTGCGTCTGATTTGGGTAACCGTGGTACTAAGCAGTAA 738 0.4187 MSSDNGYAVEVTGLSPNATDKDVYEFFAFSGAIHHVEIIRSGDYACTAYVTFKDGYSQETACLLSGATILDQRVCITRWGQYEDEFDFWNRPSHSPEDEYSSTTQHNSQFVSSAGEVVTMTQEVVKTMLAKGYVLSKDALAKAKDFDESHGVSATATAKVSELSQRIGLTDKLSAGYEVVKSVDQRYNVSETTKAAASATGRSVAAAANSVVNSSYFSKGALWMSGALTRAAQAASDLGNRGTKQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01793 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Tsu05g01793 245 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tsu05g01793 245 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 245 - -
Tsu05g01793 245 CDD RRM_Vip1_like 9 77 IPR034360 -
Tsu05g01793 245 Gene3D - 2 85 IPR012677 -
Tsu05g01793 245 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 3 245 - -
Tsu05g01793 245 SUPERFAMILY RNA-binding domain, RBD 2 95 IPR035979 GO:0003676
Tsu05g01793 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01793 Tsu-Chr5 19029535 19033783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01793 - - gmx:100805907 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01793 05 19029535 19033783 Tsu05g01793 05 19029535 19033783 ECH