Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01757 ATGAAGAATAGTGACATAACAGTAACAAAACTAGTATCAAATGGATTATACAAACAAGCCCTTCAATTCTATTCCAAACTCCACTCTTCTTCCCACACTCCTAACTCATTCACATTCCCAATTCTCCTCAAAGCATGTTCCAATCTCTCTTATCATTCACCTTCACAAACTCAAATCCTACATGCCCATCTCTTCAAAACCGGTTTCCATTCCCACCCTCACACCTCCACTGCCCTCACTGCTTCCTATGCAGCTAATTCTCGCTCTTTCCCAGACGCTTTCAAACTGTTCGATGAAATGCCTCAACCAACTATCACTGCCTTCAATGCCGTGCTTTCTGGACTCTCGCGAAACGGGCATCGTGGGGAAGCTATTGGGCTTTTCCGCAAAATTGGGATTTGGAATCTTAGGCCTAATTCTGTCACCATTGCGTCTTTACTTGCCGCAcgcgatataaaaaatgaaaatcatgtGCAGCAGGTTCATTGCTTGGCGCTCAAGTTAGGAGTTGAATCTGATGTTTATGTTTCCACTTCGCTTGTCACTAGTTATTCGAAATGTGGAAGTTTGATTTCGTCGaataaggtttttgaaaatttgcAGGTGAAAAATGTGGTTTGTTACAATGCTTTTATGTCGGGGTTGTTGCAAAACGGGTTTCCTCGTcttgtttttgatgtttttaaggaTATGATGAGGAGTTTGGAGCAAAAACCGAATATGGTGACTTTGGTGTCTGTTATTTCAGCATGTGCTGCCCTTTTGAACATTCGTTTGGGGAAGCAGATTCATGGGCTTAGAATGAAAATGGAAGCTTGTGATCATGTTATGGTGGTAACTTCACTTGTGGACATGTATTCAAAGTGTGGTTGTTGTGGTTTtgcttttgatgtttttaatgaAAGTAAAACGAGGAACTTGATCACTTGGAACTCTATGATTGCTGGGATGATGATGAATTCAGAGAGTGAGAGGGCTGTTGAAGTGTTTGAGAGGATGATGGATGAAGGGGTTTTGCCTGATTCAGCAACATGGAACTCTTTGATTGGTGGGTTTGCACAAAAAGGTGAGTGTGTGGAAGCTTTTAAGTACTTCAGGAAAATGCTGTGTGCTGGTGTGGCTCCATGTTTGAAGATTGTGACTAGTCTTTTGTCTGCGTGTGCTGATTCATCTGTGTTGCAAAGTGGGAAAGAGATACATGGGTATGCTTTGAGAATTTGTGTTgataaagatgatttttttacaACTGCTTTGGTTGATATGTATATGAAATGTGGGTGTGTTTCTTTGGCACGTTTTGTCTTTGATCAGTTTGATGCAAAACCAGATGATCCTGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGGAATGGAGACTATGAGTCTGCTTTTGAAATCTTTGATGAAATGTTGATTGAAATGGTTCAACCGAATGGTGTAACATTTGTTAGTGTTCTATCTGCTTGTAGCCACAGTGGCCAAGTTGAGAGAGGATTAAATGTTTTCAGAATGATTAGGGAGTATGGTTTGGATCCAAAGCCTGAGCATTTTGGTTGTGTTATTGATCTTTTGGGTCGATCTGGTCGGTTGGGCGAAGCTCGAGATTTGGTGCAAGAATTAGCAGAACCTCCTGCATCCGTTTTTGATTCTTTGCTTGGTGCATGCAGGTGCTACCTAGATTCTAATCTTGGAGAAGAAATGGCCATGAAACTTCTTGACATGGAACCAGAAAATCCAGCTCCGCTGGTGGTTTTATCTAACATATATGCGGCATTGGGAAGATGGAGAGAAGTAGAAAGGATAAGATGCTTGATCACAGATAAAGGATTGGACAAACTTTCTGCTGTTAGCATGATAGAAGTTGCATGA 1872 0.3958 MKNSDITVTKLVSNGLYKQALQFYSKLHSSSHTPNSFTFPILLKACSNLSYHSPSQTQILHAHLFKTGFHSHPHTSTALTASYAANSRSFPDAFKLFDEMPQPTITAFNAVLSGLSRNGHRGEAIGLFRKIGIWNLRPNSVTIASLLAARDIKNENHVQQVHCLALKLGVESDVYVSTSLVTSYSKCGSLISSNKVFENLQVKNVVCYNAFMSGLLQNGFPRLVFDVFKDMMRSLEQKPNMVTLVSVISACAALLNIRLGKQIHGLRMKMEACDHVMVVTSLVDMYSKCGCCGFAFDVFNESKTRNLITWNSMIAGMMMNSESERAVEVFERMMDEGVLPDSATWNSLIGGFAQKGECVEAFKYFRKMLCAGVAPCLKIVTSLLSACADSSVLQSGKEIHGYALRICVDKDDFFTTALVDMYMKCGCVSLARFVFDQFDAKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLIEMVQPNGVTFVSVLSACSHSGQVERGLNVFRMIREYGLDPKPEHFGCVIDLLGRSGRLGEARDLVQELAEPPASVFDSLLGACRCYLDSNLGEEMAMKLLDMEPENPAPLVVLSNIYAALGRWREVERIRCLITDKGLDKLSAVSMIEVA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01757 623 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 618 - -
Tsu05g01757 623 Pfam PPR repeat 107 130 IPR002885 -
Tsu05g01757 623 Pfam PPR repeat 518 541 IPR002885 -
Tsu05g01757 623 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Tsu05g01757 623 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Tsu05g01757 623 TIGRFAM PPR: pentatricopeptide repeat domain 206 234 IPR002885 -
Tsu05g01757 623 TIGRFAM PPR: pentatricopeptide repeat domain 448 472 IPR002885 -
Tsu05g01757 623 TIGRFAM PPR: pentatricopeptide repeat domain 481 513 IPR002885 -
Tsu05g01757 623 PANTHER OS07G0578800 PROTEIN-RELATED 9 618 IPR045215 GO:0003723|GO:0009451
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Tsu05g01757 623 Pfam E motif 559 621 IPR046848 -
Tsu05g01757 623 Pfam PPR repeat family 203 252 IPR002885 -
Tsu05g01757 623 Pfam PPR repeat family 447 491 IPR002885 -
Tsu05g01757 623 Pfam PPR repeat family 306 353 IPR002885 -
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 239 IPR002885 -
Tsu05g01757 623 Gene3D Tetratricopeptide repeat domain 151 261 IPR011990 GO:0005515
Tsu05g01757 623 Gene3D Tetratricopeptide repeat domain 262 401 IPR011990 GO:0005515
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Tsu05g01757 623 Gene3D Tetratricopeptide repeat domain 3 150 IPR011990 GO:0005515
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Tsu05g01757 623 Gene3D Tetratricopeptide repeat domain 416 618 IPR011990 GO:0005515
Tsu05g01757 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01757 Tsu-Chr5 18168994 18170865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01757 13 623 Glycoside Hydrolase AT3G49170 27.625 6.09e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01757 - - gmx:100809263 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01757 05 18168994 18170865 Tsu05g01757 05 18168994 18170865 ECH