Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01668 ATGTCCTCGCGTCGCCACTCACTCAGTGGTCCTCCTCAACTCACCGGCACACCTTCGACTCACGAGCTCCGGCAACGAGTCATTAATTGTCTCAACAAACTCTCCGACAGAGATACACTCGCCGGCGCCACCGTAGAGCTTGAATCCATCGCTAAAACACTAAACCATGACTcgttctcttcttttctctcttgcATTCATAACACTGATGCATCTTCCAAATCACCGGTTCGTAAACAATGTGTTAACCTTTTGAGTCTTCTCTCGCGTTTCCACGGTGATGCTCTTTCAccttttctttctaaaatgaTCGCCACTGTTCTCCGACGGTTACGAGATCCGGATTCTGTTGTAAGATCTGCCTGTGTCGACGCTGTTGCTGAGATGTCGTCGCGCATTACTCGGCCGGCGTTCTCTGTTGCGTTCTTGAGGCCGTTTATGGACGCGTTAGCGTTGGAGCAAGACGCAAATGCGCAGATCGGAGCTGCTTTGTGTCTTGCTGCGGCCGTTGAGGCGGCGCCGGAGCCGGATGTGGAGTCGCTCCGGCGTACTACGCTTCCGAGGCTGGGGAAGCTTCTGAAGACTGACTCGTGTAAGGCTAAGGCGCCGTTGTTGGTGCTGATCGGAAGTGTGGTTTCCGTTCGTGGTGCTTCGAGCCGTGCAGCGATGAACTGGTTGGTTCCTTGTCTTGTTGAGTTCCTCGGAAGTGAGGATTGGACTGTTAGAAAAGCCGCCGCCGAGGTGTTGGGGAAGGTGGCTTCGGTGGAGAAAGATTTGGCGTCACATCATAAGGTTTTGTGTTTGGATTCGTTGCAGAATCGAAGATTTGATAAGGTTAAAGTTGTTAGAGAGACTATGAATTGTTCATTGGATATGTGGAAGGAAGTAAAAGATATTTCTGAAAATGTTCCTACTCCGGTTAAATCTGCATGTGCTTCAGTAGgcacTGATGATGGTAAAGGTCAGTGTGTGACCAAAAGTTCACCCTTTGTTGGCTCTAAATCGTCCCAACCAAAGAAAACAATCCCTTCAAGCAGGTCCCCTCCATCTACCATTTCAGTTTTATCCTCTGGCAAAAAAGGGAGTCTTTTAAAGAGTAATGACAAGGACTCAAGAATGGGGCCGTTGTACCAGCGGCGCGATCATGACAAATCATCTGATGACAAGCTTGAAATGCCAGTATTGAAGTCCTCCCTTTCAAATATGAGTACAACCAAGGAAGATGATATTAAAAGGTGTGATTTTGAAGATTCTAAGTCAGCCTCATATCAGAATGCGACAAATTCAGAAGCTGATGTAAAGCGAGTTTTCTATAGCAAAATATCTGACGAGAAATTGCGGAAGTTTGGTGGTTCAAAAGCTCGTGTAGTTCCATGTTCCGATGAGGACCAGCTCGACACAGATGTTACTGCCAACAATGTAAATGATGTTTGTGAAAGCCCACAAGATGTTGAGGATTTGTCTTTGATCCGGGAACAACTTCTTCAAATTGAAAACCAGCAATCGAATCTGTTAGACCTCCTTCAGAGATTTATTGGAACCTCTCAAAATGGGATGAATTCTCTGGAGACACGTGTATATGGTCTAGAGATGGCCTTGGATGAAATATCATATGATTTGGCAGTATCAAGTGGCAGGATTCCCAATAGTGATGCCATAGAAGACATGTGTTGCAAGCTACCTGGTACTGACTTTTTGAGTTCTAAATTCTGGAAGAAGACAGAAAGCCGGTATACAACGCCAAGGTTCTCTTTTGGAAGCTCAGCATCAACTAATCTTGTGCATAATGCGACTGATAGAAATGGAAGCAAAGAAACATTAACTGCAAATAGCAAAAGATTTCAGCATCGTAGGGATGAGGGTGGATATATTGTGAACCCATTAGCAGAAATTCAAAGTGATTTGAAGGGTCGTTCAGGGCATCATTTGTATAAAATGTCTAAAAACTTTGTTCAAGATGCTGGGAATGCACAAGGTAACAGTTCCAGCAGATTTGATGGCTTTTCATCTAGCGGAGTACTGAGAAGCCAGAATATCAGGTAA 2043 0.4435 MSSRRHSLSGPPQLTGTPSTHELRQRVINCLNKLSDRDTLAGATVELESIAKTLNHDSFSSFLSCIHNTDASSKSPVRKQCVNLLSLLSRFHGDALSPFLSKMIATVLRRLRDPDSVVRSACVDAVAEMSSRITRPAFSVAFLRPFMDALALEQDANAQIGAALCLAAAVEAAPEPDVESLRRTTLPRLGKLLKTDSCKAKAPLLVLIGSVVSVRGASSRAAMNWLVPCLVEFLGSEDWTVRKAAAEVLGKVASVEKDLASHHKVLCLDSLQNRRFDKVKVVRETMNCSLDMWKEVKDISENVPTPVKSACASVGTDDGKGQCVTKSSPFVGSKSSQPKKTIPSSRSPPSTISVLSSGKKGSLLKSNDKDSRMGPLYQRRDHDKSSDDKLEMPVLKSSLSNMSTTKEDDIKRCDFEDSKSASYQNATNSEADVKRVFYSKISDEKLRKFGGSKARVVPCSDEDQLDTDVTANNVNDVCESPQDVEDLSLIREQLLQIENQQSNLLDLLQRFIGTSQNGMNSLETRVYGLEMALDEISYDLAVSSGRIPNSDAIEDMCCKLPGTDFLSSKFWKKTESRYTTPRFSFGSSASTNLVHNATDRNGSKETLTANSKRFQHRRDEGGYIVNPLAEIQSDLKGRSGHHLYKMSKNFVQDAGNAQGNSSSRFDGFSSSGVLRSQNIR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01668 680 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Tsu05g01668 680 Pfam HEAT repeat associated with sister chromatid cohesion 101 126 IPR026003 -
Tsu05g01668 680 Gene3D - 13 367 IPR011989 -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 594 609 - -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 655 680 - -
Tsu05g01668 680 Pfam HEAT repeat 226 255 IPR000357 GO:0005515
Tsu05g01668 680 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 3 669 IPR033337 GO:0005874|GO:0008017
Tsu05g01668 680 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 3 669 - -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 320 362 - -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 363 391 - -
Tsu05g01668 680 SUPERFAMILY ARM repeat 20 286 IPR016024 -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 594 613 - -
Tsu05g01668 680 Coils Coil 490 510 - -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g01668 680 MobiDBLite consensus disorder prediction 312 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01668 Tsu-Chr5 16789807 16793839 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01668 - - mtr:MTR_5g036950 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01668 05 16789807 16793839 Tsu05g01668 05 16789807 16793839 ECH