Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01654 ATGGCTACCACCAACACTCACCTTATCCTCTCATCACTCCAACCTCGCCACCAccattctttctctctcctccAAACTACTTTCTCATTCTCTCTCCTCCGTTTCCCTCTCTCTTCTTCCTTCAACTCCCCAACCTCATCTCTCCGCACCGCCATTTCCCTCAAACCAAACTCTTCCCTCTCTGGCCATCCCGACGAAGACGACGacgacgaagaagaagaagaagacgaagaagatgaagatgatgaagatgaggaCGATGATGAAGATATTGCGGCTGATGAATATGAAGATGTTGTGTCCGGTGAAGCTTCGGATGAAGATGAAGTGGTTAATGTCGATGAATTTTCGCGTTACGATGAAGGATTCAAATGGCAGAGAGTTGAGAGGCTTTGTAAGGAAGTTAAAGAGTTTGGTGTTGGAATTATTGATGCTGATGAACTTGCTTCTGTTTATGATTTCCGAATCGATAAGTTTCAGcGGCAAGCGATTGAAGCTTTTCTGAGAGGTTCGTCGGTGGTGGTTTCTGCTCCGACGAGTAGTGGAAAGACATTGATTGCGGAGGCTGCAGCTGTTGCTACCGTGGCTAGGGGACGGAGATTATTCTATACGACTCCTCTTAAAGCTTTGTCTAATCAGAAGTTTCGCGAATTTCGGGACACTTTTGGTGATGATAATGTTGGCCTTCTTACGGGTGATTCTTCTCTCAACAAGGAGGCTCAGATTTTGATTATGACCACAGAGATATTACGCAACATGTTGTATAAGAGTGTTGGTACTTTTTCTTCTGGAAGAGGACTTGTCGATGTTGATGTCATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGCGGTACAGTCTGGGAAGAAGTTGTTATTTATTGCCCAAATAAGGTTCAACTTATTTGTCTCTCTGCAACCGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGTCAGATTCATGGTGGAACAGAGTTGGTAACAACGTCGAAACGCCCAGTTCCTCTGAATTGGCATTTCTCTTTGAAGAATTTCCTATTACCACTTCTTGATGAGAAGGGAACACAGATGAACAGGAAGCTGTCACTCAAATATTTACAACTTCAAGCTGCAATACCTTACAAGAATGATTGGCCTAGAAAAAGGATTTCCAGGAGACGTGGACCTCGCACAAGCTATGACGGTGATGATAGCATGATGGAAGAACGTTCTCTTTCAAAGCATGACATAAATGCAATTCGTCGATCACAAgTTCCTCAAATAATCGATACGTTATTGCACCTTCAGTCTAGGGATATGCTTCCAGCTGTTTGGTTTATTTTTAGCAGGAAAGGTTGCGATGCAGCTGTGCAATATGTTGAAGATTGCAAACTCTTAGACGAGTGTGAAGCAAGTGAGGTTCAACTAGCCTTGAAGAAGTTCCGCATTCAGTATCCTGATGCTGTCCGAGAAACAGCTGTGAAAGGACTTTTGCAAGGGGTTGCTGCGCATCATGCTGGATGTCTACCTTTGTGGAAGGCTTTCATAGAAGAATTGTTTAATAGAGGACTTCTCAAGGTTGTTTTTGCTACTGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACAGCTGTTATTTCATCCATCAGCAAAATAGGTGATAGTGGGCGCACCCTATTGACTTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGTAGAGGCATTGATGAAAGTGGTCACGTAGTCCTTGTCCAAACTCCTTATGAAGGTGCTGAAGAGTGCTGCAAGTTGCTTTTTTCTGGACTTGAGCCTCTAGTGTCGCAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGGTGGCGGGAAAGCCATTCGTAGGTCAAACACATCAGATGAAACGAAACTTTCCTCGGGGAAAACTTTGGATGAAGCTAGGAAGTTAATTGAGCAAAGTTTTGGAAATTATGTTAGTAGCAGTGTTATGGTGGCTGCTAAAGAGgaaattaatagaattgaaaaagaaattcaGTTATTGATGTCAGAAATCACTGATGAAGCAATAGATAGAAAAAGTAGGAAGGTTTTACCACAGCACCAATACAAGGAGATTGCAGAATTACAGGAAGATTTAAGGGCAGCGAAACGTGTTCGGGCTGAGTTGCGAAAACAGAGGGAAGCAGAGAGAATATCTGCCTTGAAACCTTTATTGGAAGAGTCCGAAAATGAACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTCAACTCCCTTGGTgcttcaaaactcaaaaacatgaTCAATTCTGTTGGTTCTTTTGCATTAAATTCAGCAGATGCAGATTCTGAATTGAATGAAGATCGTTTACCATCTTATCACGTAGCTCTTGGCTCCGATAACTCTTGGTATCTATTTACAGAAAAGTGGATCAAAACAGTATATGAGACAGGCCTTCCTGATGTTCCTTTAGTTCAAGGTGAAACACGACCTCGAGAAATTATGAGTGGTCTCCTTGATAAGGAGGACATGAAGTGGGATAACCTTGCTCAGTCTGAACACGGTGGTTTATGGTTCACGGAAGGAGCTCTGGAAACATGGTCGTGGAGCTTGAACGTTCCTGTTTTGAGTAGCTTCTCTGAAAATGATGAGGTGCTACTGAAATCTCAAACATACAGAGATGCATCTGAACGATACAGGGAGCAAAGAAAAAAAGTCGCacgtttgaaaaaaaatatatctcgTACTGAAGGCTATagagaatataataaaatcctAGACGCAGTCAAGTTCACCGAGGAGAAAATCAAGCGAATGAGGACTAGATCCAAACGTTTGACTGATCGGATAGAACAAATTGAACCGTCAGGTTGGAAGGAGTTTATGAACATTTGCAATGTCATACGTGAGACCAGAGCTTTAGATATTAACACACATTTCGTATTTCCGTTAGGGGAAACTGCTTCCGCAATTCGTGGAGAAAATGAGCTTTGGCTTGCAATGGTTCTTCGTAGTAAAATTTTACTAGAACTAAAACCTGCACAACTTGCTGCAGTGTGTGCAGGTTTGGTATCTGAGGGTATAAAAGTCAGACCATCAAATAACAACAATTACATTTATGAGCCTTCTTCAACTGTACTCAATGTCATAGAGTTATTGGAGGAGCAAAGAAGTGCCCTATTGGCAGTTCAGGAGAAACATGGAGTAACAATTTCTTGCTGTTTGGATAGCCAGTTTTGTGGTATGGTTGAAGCCTGGGCTTCTGGGTTGACATGGAAAGAAATAATGATGGAGTGCGCAATGGATGATGGTGATCTATCTCGTCTCCTTCGACGGACCATTGATATATTAGTTCAGATTCCTAACTTGCCAGATATTGATCCATTTTTGCAGCGAAATGCAAGAGCTGCTTCTAATGTCATGGACCGGCCTCCAATAAGTGAACTTGCTGGGTAG 3498 0.4071 MATTNTHLILSSLQPRHHHSFSLLQTTFSFSLLRFPLSSSFNSPTSSLRTAISLKPNSSLSGHPDEDDDDEEEEEDEEDEDDEDEDDDEDIAADEYEDVVSGEASDEDEVVNVDEFSRYDEGFKWQRVERLCKEVKEFGVGIIDADELASVYDFRIDKFQRQAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRDTFGDDNVGLLTGDSSLNKEAQILIMTTEILRNMLYKSVGTFSSGRGLVDVDVIVLDEVHYLSDISRGTVWEEVVIYCPNKVQLICLSATVANPDELAGWIGQIHGGTELVTTSKRPVPLNWHFSLKNFLLPLLDEKGTQMNRKLSLKYLQLQAAIPYKNDWPRKRISRRRGPRTSYDGDDSMMEERSLSKHDINAIRRSQVPQIIDTLLHLQSRDMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVQLALKKFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFNRGLLKVVFATETLAAGINMPARTAVISSISKIGDSGRTLLTSNELLQMAGRAGRRGIDESGHVVLVQTPYEGAEECCKLLFSGLEPLVSQFTASYGMVLNLLGGGKAIRRSNTSDETKLSSGKTLDEARKLIEQSFGNYVSSSVMVAAKEEINRIEKEIQLLMSEITDEAIDRKSRKVLPQHQYKEIAELQEDLRAAKRVRAELRKQREAERISALKPLLEESENEHLPFLCLQYRDSEGVQHSIPAVFLGKVNSLGASKLKNMINSVGSFALNSADADSELNEDRLPSYHVALGSDNSWYLFTEKWIKTVYETGLPDVPLVQGETRPREIMSGLLDKEDMKWDNLAQSEHGGLWFTEGALETWSWSLNVPVLSSFSENDEVLLKSQTYRDASERYREQRKKVARLKKNISRTEGYREYNKILDAVKFTEEKIKRMRTRSKRLTDRIEQIEPSGWKEFMNICNVIRETRALDINTHFVFPLGETASAIRGENELWLAMVLRSKILLELKPAQLAAVCAGLVSEGIKVRPSNNNNYIYEPSSTVLNVIELLEEQRSALLAVQEKHGVTISCCLDSQFCGMVEAWASGLTWKEIMMECAMDDGDLSRLLRRTIDILVQIPNLPDIDPFLQRNARAASNVMDRPPISELAG 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01654 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 586 IPR027417 -
Tsu05g01654 1165 Pfam DEAD/DEAH box helicase 159 311 IPR011545 GO:0003676|GO:0005524
Tsu05g01654 1165 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 41 1161 - -
Tsu05g01654 1165 SMART DSHCT_2 990 1164 IPR012961 -
Tsu05g01654 1165 Coils Coil 906 926 - -
Tsu05g01654 1165 Pfam DSHCT (NUC185) domain 995 1160 IPR012961 -
Tsu05g01654 1165 Coils Coil 943 963 - -
Tsu05g01654 1165 MobiDBLite consensus disorder prediction 52 91 - -
Tsu05g01654 1165 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 41 1161 - -
Tsu05g01654 1165 Gene3D - 336 604 IPR027417 -
Tsu05g01654 1165 Gene3D - 117 335 IPR027417 -
Tsu05g01654 1165 Gene3D - 936 1157 - -
Tsu05g01654 1165 SMART ultradead3 152 342 IPR014001 -
Tsu05g01654 1165 Coils Coil 704 727 - -
Tsu05g01654 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 619 IPR001650 -
Tsu05g01654 1165 MobiDBLite consensus disorder prediction 64 91 - -
Tsu05g01654 1165 CDD SF2_C_Ski2 410 585 - -
Tsu05g01654 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 328 IPR014001 -
Tsu05g01654 1165 SMART helicmild6 487 573 IPR001650 -
Tsu05g01654 1165 Coils Coil 662 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01654 Tsu-Chr5 16475333 16482874 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01654 K26077 - gmx:100780908 1713.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01654 05 16475333 16482874 Tsu05g01654 05 16475333 16482874 ECH