Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01643 ATGataactaaaaaaatgaaaaccgaAATTCATTTTCACACCCTACCACTAATTGTTTTCACCCTATCTCTCTTTTTGGGCCAATGTATATCTGACCCTGACCCACTTCAAGATTATTGCATTGCAGATAACAAAAGCACTTTTTTCATAAATGGATTACCATGCATTGATCCAAAACAAGCTACTTCAGCTCATTTTGTAacatcatcattatcaaaacCAGGTAACACAACAAACATGTTTGGTTTTAGTGTTACACCAACAAACACAATTAATCTACCTGGGCTTAACACAATGGGCCTAGTTTTAGTTCGTGTTGATATAGCTGGTAATGGAATTGTGCCACCACATTCACACCCACGGGCCTCAGAAGTTACCACTTGTTTAAAAGGGCTTTTACTTGTGGGCTTTATTGATACATCAAATCGGGCTTTTACTCAAAATTTAAGCCCAGGTGAATCATTTGTTTTTCCTAAAGGACTTGTGCATTTTTTGTATAATCGTGATTCTAAGGAACCAGCTATTGCAATTTCTGGACTTAATAGTCAAAATCCTGGTGCACAAATTTCATCAATTGCAAACTTTGTTAGTAAACCTTCTATTCTTGATGAAATTCTTAAGAAGGCTTTTCAAATTAGTGGTCAAGAAGTTGAAATTATTAGGAAGAAGCTTGGTGGTTGA 681 0.3407 MITKKMKTEIHFHTLPLIVFTLSLFLGQCISDPDPLQDYCIADNKSTFFINGLPCIDPKQATSAHFVTSSLSKPGNTTNMFGFSVTPTNTINLPGLNTMGLVLVRVDIAGNGIVPPHSHPRASEVTTCLKGLLLVGFIDTSNRAFTQNLSPGESFVFPKGLVHFLYNRDSKEPAIAISGLNSQNPGAQISSIANFVSKPSILDEILKKAFQISGQEVEIIRKKLGG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01643 226 PRINTS Germin signature 117 137 IPR001929 GO:0030145
Tsu05g01643 226 PRINTS Germin signature 147 167 IPR001929 GO:0030145
Tsu05g01643 226 PRINTS Germin signature 181 196 IPR001929 GO:0030145
Tsu05g01643 226 CDD cupin_OxOx 32 224 - -
Tsu05g01643 226 SMART Cupin_1_3 69 218 IPR006045 -
Tsu05g01643 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 225 - -
Tsu05g01643 226 Gene3D Jelly Rolls 31 226 IPR014710 -
Tsu05g01643 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 17 225 - -
Tsu05g01643 226 Pfam Cupin 70 217 IPR006045 -
Tsu05g01643 226 ProSitePatterns Germin family signature. 112 125 IPR019780 GO:0030145
Tsu05g01643 226 SUPERFAMILY RmlC-like cupins 32 222 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01643 Tsu-Chr5 16362347 16363155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01643 32 225 Miscellaneous Gene Families AT5G39130 46.500 2.89e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01643 - - lja:Lj2g3v1365980.1 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01643 05 16362347 16363155 Tsu05g01643 05 16362347 16363155 ECH