Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01638 ATGGAGTGCGCAGCGAAGGGGAGCGGAACAAGGTGCATCAACGCCGCAACGACACTCTGTGCACGCTGCGAAGCCGTTGCTTATTGCTCTCTCTCACACCGgATTGAGCATTGGAGTCATCACAAACATGAGTGTGATAGGTTACAGCAACAAATGGAAAGTGTCGATGTTCTCAATGATTTTCCTTTCACTTTCTCTCGCGAAGCCACCTTTCAGATTTGTGTAAAACAAGAAACAAGGTGTTCATTTTTGAGCAAGAGAGGCCTTCATCAAGTGGGAATGTGGATGCATGAATGCCAATGTGGAGGATCATCTGCTTCATTTAATCTTTTAGGGTTAAACATTGGCTGGGAGCTCCCTAGTGTTTTGTGTCCTTGTCGTGGTCCTGACTCTCTGATATCAGAGCATTTGTGTAGTTGGAGAGACTACTATACGTGGAGGTGCATCCCACTAGACTCACCTGTTGCTTTACCTCTTCAGTGGCCACTTACAATATATCACGCTGCTCAACTTGTTGGAATTACAACCTCGAATCTTGAAGTCGGTGATAAGTTGAACATTCATTACCTTGGACCTGAGAAGGAGCTGCTACAACTTGCCGTGTTTGGAGAATTACTTGCCCTCTTCCCTAGTGTACATATTCATATAGAACTCGTTGGACCTGCAATTCCCACTCAAAGGGATGGTGAAAAGATCAGCATTTCTAAGTACCCTTGTTGCAATGAAGCCAAGTGTTTGTGCAAACTAGCGGGTGAAAATGAGAGTATGACTTCTGCATTGACAATGCAGCTTTGGCGAGGATTCTATCATGACAGATACACAGATATTATTAAGGATTCCTTTCCTCACCTAATTATTGCTCCAAATAGTGGCATTGCTGCCTATTCCAGTTGGTTGCCAAGTATTGAATTAATTGAAAAGATTGACGTCCCAACTGTTTTTACTGATTATTGTGAAGAAGCTTGTCATCTTGCAGCAAGTTGCATAAAGACTGTAACTGGACGCCCTCTTAGATTACCTGTTCAATTAAATCCTTTCAGACAGCCAGTTGCCGTGGAAGACAGCGTGTTGTTGCTTCCGTGCTACTCAAATTGCTTTCTTTTCGagaaagaaaaagaaagggcaAAGTGCATAGTAGTAGTAGAGGATGAAGGTATAGTTCTCACTATATTAGAAGAAGAAGTGAAAAAATATAGGAGAAGAAAAAGCAAGAGTTTTGTTGTTAAAGCAAAAAAGAGGCGCTACCTCTTTGATCTTGATAGGCAAGGACCATGTTGTGTCATgAGTTATATGCAACAACACTTTTATAATCTTGGAATCTTAATTTGTTCCACTGATCCATTAATGAGGGCAGTAAGACTTTACTCTGGTGTCCAAATCTTGCCTTAA 1389 0.4125 MECAAKGSGTRCINAATTLCARCEAVAYCSLSHRIEHWSHHKHECDRLQQQMESVDVLNDFPFTFSREATFQICVKQETRCSFLSKRGLHQVGMWMHECQCGGSSASFNLLGLNIGWELPSVLCPCRGPDSLISEHLCSWRDYYTWRCIPLDSPVALPLQWPLTIYHAAQLVGITTSNLEVGDKLNIHYLGPEKELLQLAVFGELLALFPSVHIHIELVGPAIPTQRDGEKISISKYPCCNEAKCLCKLAGENESMTSALTMQLWRGFYHDRYTDIIKDSFPHLIIAPNSGIAAYSSWLPSIELIEKIDVPTVFTDYCEEACHLAASCIKTVTGRPLRLPVQLNPFRQPVAVEDSVLLLPCYSNCFLFEKEKERAKCIVVVEDEGIVLTILEEEVKKYRRRKSKSFVVKAKKRRYLFDLDRQGPCCVMSYMQQHFYNLGILICSTDPLMRAVRLYSGVQILP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01638 462 Pfam MYND finger 12 45 IPR002893 -
Tsu05g01638 462 ProSiteProfiles Zinc finger MYND-type profile. 1 45 IPR002893 -
Tsu05g01638 462 PANTHER ZINC ION BINDING PROTEIN 1 368 - -
Tsu05g01638 462 Pfam MSS51 C-terminal domain 162 354 IPR046824 -
Tsu05g01638 462 PANTHER ZINC ION BINDING PROTEIN 1 368 - -
Tsu05g01638 462 SUPERFAMILY HIT/MYND zinc finger-like 11 51 - -
Tsu05g01638 462 Gene3D - 2 52 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01638 K24081 - gmx:100808017 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01638 05 16299284 16307877 Tsu05g01638 05 16299284 16307877 ECH