Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01625 ATGAAGTCATATTCATATAAACTTTCATTGCTCTTAATTCTTCTCCTTATCACTGTCAATACAACCCTTTCGTTACCGTTTAACAACCCTTTTAATAATCCATTCAAGAAATTGGCAAAGTGGATTGGAAACAAGGTTTTGAAAGAAGGTGCTCAGGAAACTGCTgataatattttgaatattacgttcaacaaaatccataaagctgaagaagaagaacggTCGTCTTTACCACAAGGAAAAGAAGAGATCGACGGCCTATATATAATCAAAGACTACTTGAGTGATTTTGGCTACCTCCAACAAACTGGGCCTTTTGATAACATTACAAACCCCGAAACAACATCCGCTATTGAAATCTACCAACAGAATTTCAATCTCCAAGCTAACGGTAACCTAAACAGCGAGACTTTAGAGCAAATGTTTTTACCACGATGTGGTGTCCCCGATATAAATTTCGACTACAATTTGTCGGATACAAATACCATTTCATGGCCGAAAGGGAACAAGTGGTTCCCTaaaggcaaaaaaaatcttacatATGGTTTTGATCCTGAGGATGAAACCCCACCCGAAGTGATCGATGTGTTTAGAAATGCCTTTATGCGATGGTCGACGACCACAAAGGTTCTAAATTTCACGGCGGTGACATCCTACGATGATGCAGACATTAAGATTGGACTCTATGTTTCAAATAATGAAGAGCTTGCAGATGTTGTAGTGCTAGGTGGCACTATTATCAGTATGCAACTCAATTCTAGTGTGAAGTCAGGTGAGATACTTTTCGACGCTTCAAAGTATTGGGTATTACCAACTGATGATAATGATACTTTGTCGTGGCAAGATGGAATATTCGACTTGGAAAGTGTGGCAATGCATCAAATAGGTCATCTACTCGGACTTGATCACTCTTTTGATAATGACTCAATAATGTACCCAACCATATTGCCATCACATCAAAGGAAGGTTCAAATAACAGATTCTGATAATCAAAGCATCCACGACCTCTATACAACTGCGATTAAAACCGATGTTAATTATGGTTATGTCGGGTCTAGTTCCGGTCTCATTACCTCTTTGTTTCTTGGATTTGCTTTTTTGGCTATGTTGAACTAG 1116 0.3638 MKSYSYKLSLLLILLLITVNTTLSLPFNNPFNNPFKKLAKWIGNKVLKEGAQETADNILNITFNKIHKAEEEERSSLPQGKEEIDGLYIIKDYLSDFGYLQQTGPFDNITNPETTSAIEIYQQNFNLQANGNLNSETLEQMFLPRCGVPDINFDYNLSDTNTISWPKGNKWFPKGKKNLTYGFDPEDETPPEVIDVFRNAFMRWSTTTKVLNFTAVTSYDDADIKIGLYVSNNEELADVVVLGGTIISMQLNSSVKSGEILFDASKYWVLPTDDNDTLSWQDGIFDLESVAMHQIGHLLGLDHSFDNDSIMYPTILPSHQRKVQITDSDNQSIHDLYTTAIKTDVNYGYVGSSSGLITSLFLGFAFLAMLN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01625 371 ProSitePatterns Matrixins cysteine switch. 144 151 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Tsu05g01625 371 SUPERFAMILY PGBD-like 83 151 IPR036365 -
Tsu05g01625 371 SMART col_5 167 339 IPR006026 GO:0006508|GO:0008237|GO:0008270
Tsu05g01625 371 Pfam Putative peptidoglycan binding domain 89 141 IPR002477 -
Tsu05g01625 371 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 176 337 - -
Tsu05g01625 371 Gene3D Collagenase (Catalytic Domain) 78 342 IPR024079 GO:0008237
Tsu05g01625 371 PANTHER MATRIX METALLOPROTEINASE 82 340 - -
Tsu05g01625 371 PRINTS Matrixin signature 290 315 IPR021190 GO:0004222|GO:0006508|GO:0008270
Tsu05g01625 371 PRINTS Matrixin signature 197 212 IPR021190 GO:0004222|GO:0006508|GO:0008270
Tsu05g01625 371 PRINTS Matrixin signature 141 154 IPR021190 GO:0004222|GO:0006508|GO:0008270
Tsu05g01625 371 PRINTS Matrixin signature 325 338 IPR021190 GO:0004222|GO:0006508|GO:0008270
Tsu05g01625 371 PANTHER MATRIXIN PROTEIN 82 340 - -
Tsu05g01625 371 Pfam Matrixin 175 337 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01625 Tsu-Chr5 16138632 16140057 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01625 - - mtr:MTR_5g036290 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01625 05 16138632 16140057 Tsu05g01625 05 16138632 16140057 ECH