Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01513 atgaaTCCGTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCAATACGTGCATGCAAGACTGCAGCAGAAGAGCGTGGTGTTGTAAGAAAAGAATGTGCAGCCATTCGTGCTTCAATAAATGAAAATGACCAAGATTACAGGCATCGTAATATGGCTAAGCTAATGTTCATTCATATGCTCGGGTACCCGACACATTTTGGTCAAATGGAGTGCCTCAAGTTGATAGCGTCTCCAGGATTTCCGGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGCTGGTCACCAATTCTTTAAAACAAGATCTTAATCATACAAACCAGTATATAGTGGGACTTGCACTTTGCGCTTTAGGAAACATTTGTTCAGCAGAAATGGCCCGTGATCTTGCACCAGAGGTTGAGAGATTGCTGCAATTCCGTGATCCCAATATTCGGAAGAAGGCAGCATTATGTTCTATAAGGATCATAAAAAAAGTTCCAGACTTGGCAGAAAATTTTATCAATCCTGCTACTTCCTTACTTAGGGAGAAACACCATGGAGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAACTAGCACCGAAGCTCTTGAACATATTAGGAAGAAATGCACAGATGGTTTGGTAAGAAGTCTCAGAGATCTAGCGAACAGCCCTTATTCACCAGAGTATGATATTGCTGGCATCACAGATCCATTTCTCCACATTAGGTTGCTTAAGCTTTTGCGAGTGTTAGGTGAAGGGAATGCCATTTTATATGAGTGTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGTTTACGCGTACTAGCCATCAACATCCTGGGAAGATTCTTGTCAAACCGTGACAATAATATCAGATACGTGGCACTAAATATGCTAATGAGGGCTGTAACTGCTGATGCTCAGGCAGTGCAGAGGCACCGTGCAACAATTCTAGAATGTGTAAAGGATTTAGATGCTTCAATTCGGAAAAGAGCCCTTGAACTTGTATATGTTCTGGTCAACGAAACTAATGTGAAGCCACTAGTGAAAGAGCTTGTAGATTATCTGGAAGTCAGTGATCTTGATTTCAGAGAGGACCTTACTACCAAAATATGCTCCATAGTTGCAAAATTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTAAAGGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTGTGGTATGCCTTAATTGTTGTGGTAAGCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACAGGGCATTTCAAACATCTGCTGAACAGgaATCTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGCTAGTCAATAATATTGGAATGCTTGACATAGAAGATCCAATAACAGTGACTGAGTCGGATGCAGTGGATGTTGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCTTATTAAAGCTCTCTTCACGTTTCCCGTCTTGTTCAGAGAGGATCGGGGAAATTATTGTACAGTTCAAAGGGAATCTTGTGCTAGAATTGCAGCAGAGAGCTAttgaattcaattcaattatttcTAAGCACCAAAATATTAGATCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCCACTTTCATAGGTAGGAGGGCTGGGTCTTTGCCAGGTGCCGCTTCTACAGCAACTGCGCCTTCACTTAGTCTCCCGAATGGGGTAGCCAAACCTGCCGCTCCTCTTGTAGATCTACTTgatctaagttcagatgatcctGTAGCACCTAGCTCTTCTGGTGGCGATTTTCTTCAGGACCTTCTTGGTGTTGATCTGTCACCAGCATCACAACAATCCGGTGCTGGTCAAACATCAAAAAGTGGCACAGATGTTCTTTTGGATCTCTTATCCATCGGATCACCTGTCCAGAGCAACTCAGTAGACATCTTATCCTCAAATACTAGTAACAAAGCACCTGTTTCACCATTGGATGATCTCTCGCCACTTTCACTTTCTTCAAGATCTACATCAAATGCTGGTCCTGTGATGGATTTATTGGGTGGTATTTCCTCCGGCCCACCAACAGAAAACAATGGACCAGTTTATCCATCTGTAACTGCTTTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCACTAAACAACCGGGAAACTCACAAACAACAGTTATCCAGGCTACCTTTACGAATTTGTCCTCCAATACATATACTGATTTTGTTTTCCAGGCAGCCGTTCCTAAGTTTCTTCAATTGCACTTAGATCCAGCTAGTGGCAATACTCTCCCTGCTACTGGAAATGGATCCATCACGCAAACTTTGAGAGTTACCAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAATCAGTAATTTTCCTCGTGATTTATGA 2532 0.4139 MNPFSSGTRLRDMIRAIRACKTAAEERGVVRKECAAIRASINENDQDYRHRNMAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLITGVQLCTDLCKTSTEALEHIRKKCTDGLVRSLRDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAVTADAQAVQRHRATILECVKDLDASIRKRALELVYVLVNETNVKPLVKELVDYLEVSDLDFREDLTTKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEVWYALIVVVSNASELHGYTVRALYRAFQTSAEQESLVRVTVWCIGEYGDMLVNNIGMLDIEDPITVTESDAVDVVEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIGEIIVQFKGNLVLELQQRAIEFNSIISKHQNIRSTLVERMPVLDEATFIGRRAGSLPGAASTATAPSLSLPNGVAKPAAPLVDLLDLSSDDPVAPSSSGGDFLQDLLGVDLSPASQQSGAGQTSKSGTDVLLDLLSIGSPVQSNSVDILSSNTSNKAPVSPLDDLSPLSLSSRSTSNAGPVMDLLGGISSGPPTENNGPVYPSVTAFESSSLRLTFNFTKQPGNSQTTVIQATFTNLSSNTYTDFVFQAAVPKFLQLHLDPASGNTLPATGNGSITQTLRVTNSQHGKKSLVMRIRIAYKINGKDTLEEGQISNFPRDL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01513 843 MobiDBLite consensus disorder prediction 673 700 - -
Tsu05g01513 843 Pfam Adaptin C-terminal domain 726 840 IPR008152 GO:0006886|GO:0016192
Tsu05g01513 843 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 723 840 IPR008153 -
Tsu05g01513 843 Pfam Adaptin N terminal region 27 260 IPR002553 GO:0006886|GO:0016192|GO:0030117
Tsu05g01513 843 Pfam Adaptin N terminal region 263 553 IPR002553 GO:0006886|GO:0016192|GO:0030117
Tsu05g01513 843 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 262 - -
Tsu05g01513 843 PIRSF AP1_gamma 6 264 IPR017107 GO:0005794|GO:0016192|GO:0030121
Tsu05g01513 843 PIRSF AP1_gamma 262 843 IPR017107 GO:0005794|GO:0016192|GO:0030121
Tsu05g01513 843 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 263 843 - -
Tsu05g01513 843 SUPERFAMILY Clathrin adaptor appendage domain 699 842 IPR013041 -
Tsu05g01513 843 SUPERFAMILY ARM repeat 25 567 IPR016024 -
Tsu05g01513 843 Gene3D - 714 842 - -
Tsu05g01513 843 Gene3D - 2 568 IPR011989 -
Tsu05g01513 843 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 262 - -
Tsu05g01513 843 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 263 843 - -
Tsu05g01513 843 SMART alpha_adaptinc2 720 840 IPR008152 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01513 Tsu-Chr5 14600437 14610437 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01513 K12391 - gmx:100802164 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01513 05 14600437 14610437 Tsu05g01513 05 14600437 14610437 ECH