Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01479 ATGGCGGCAGCAGAAAACACAATTGAGTCCACAGATTTTCCCGTTAAGAGGCAAAGAGAAGATGAACAACTCAACAACAATGGTGTCTCTGTCTCTGAAATTGTTCCACAAGAACCTCAACCTAATGGTTTATCATCTGTTATTCCTGGCTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTATTTCAAGGGAAGTCTGATTATCAGGACGTTATGGTCTTCCAGTCAGCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATCCCTAACCCTAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTTTCACGCCATTCTTCAGTAGAAAAGATTGACATTTGTGAAATAGACAAGATGGTTGTCGATGTCTCCAAACAATTTTTCCCTCATATAGCAGTCGGTTTTGAGGATCCTCGTGTGACACTTAATATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAAGTTATGATGCAGTTATTGTGGATTCATCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCTTTTTTTGAGTCAGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCGGAAAGTATATGGCTTCACATGCACATCATTGAGGACATAGTGGCGAATTGTCGCCAGGTATTCAAAGGTTCTGTCGACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGCTTTATGCTTTGCTCAACTGAGGGGCCTTCCGTCGATTTCAAGCATCCAGTGAATCCTATTGATGAGAATGATAGCCAGCAGGCAGGAAGACCATTGAAATTTTACAACTCTGAGATTCATTCAGCAGCTTTCTGTTTGCCATCTTTTGCTAAGAGGGCAATTGCTTCTAAAGCAAACTGA 1020 0.4363 MAAAENTIESTDFPVKRQREDEQLNNNGVSVSEIVPQEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPHIAVGFEDPRVTLNIGDGVAFLKAAPEGSYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVDYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAGRPLKFYNSEIHSAAFCLPSFAKRAIASKAN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01479 339 Pfam Spermine/spermidine synthase domain 107 294 - -
Tsu05g01479 339 Gene3D Spermidine synthase, tetramerisation domain 43 101 IPR037163 -
Tsu05g01479 339 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 339 IPR001045 GO:0003824
Tsu05g01479 339 CDD AdoMet_MTases 127 238 - -
Tsu05g01479 339 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Tsu05g01479 339 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Tsu05g01479 339 PANTHER SPERMIDINE SYNTHASE-RELATED 3 339 - -
Tsu05g01479 339 TIGRFAM speE: spermidine synthase 51 329 IPR001045 GO:0003824
Tsu05g01479 339 Hamap Polyamine aminopropyltransferase [speE]. 50 335 IPR001045 GO:0003824
Tsu05g01479 339 PIRSF Spermidine_synth 40 339 IPR030668 GO:0006595
Tsu05g01479 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 334 IPR029063 -
Tsu05g01479 339 Gene3D Vaccinia Virus protein VP39 102 339 IPR029063 -
Tsu05g01479 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01479 Tsu-Chr5 14160555 14164401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01479 K00797 - gmx:100790506 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01479 05 14160555 14164401 Tsu05g01479 05 14160555 14164401 ECH