Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01477 ATGGTTCGTCCTGTATATCCTCCACGCCTGCCTGGAGCAATCAATGTACTTCCAGTATCACGCCCGCCTGTTGCAGGGATCCCACCACTTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTCCTCCTAGTGTTACTCCGGCTGAGAAGCAACATACCACCGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTTTCTCTCCTTAAATTATGCGGGAATATCAAGAGCTGGAAAAGGCCTCAGGATTTATCAAGTGGGACTCCTAAAAGTTTTGGGTTTTACGAGTTTGAGACTGCTGAAGGTGTTCTCCGTGCATTACGTCTCCTTACCAAATTGAATATTGATGGGCAAGAACTAATGATCAATGTAGATGAAGCTATGAGAAACTATCTGGAGCGGTATGTACAAAAAAAGACTGAGGACTCAAAAGAAAAGGAAACTCAGGCAACAGAAGTTGAAAAAGATGATAAAGTTGCAAAGCCTTCTGATGCAAATGACGATGCAAGGCCTGATCTAGAGCACTCAAATAAGGAGGAGGGTAATGATTCAGCAAACAAGAAATCCCATGACGTGGCAACTTTTGGGATTGTTACAGATGAAGATAGGGAAGTTGACCGGGATGCTTTAGATAAGATCAAGATGATGATTGAGGAGAGGTTGAAGACAAGACCTTTGCCTCCACCACCTCCACCGCCAGTTGGTGATGCTTCTGTGGATTCAGCTTCCGAACACCCTACTAAAACAAGAGGAGACTCAGATGTGGATACAAAGAAGAATGAACCAGCTGAAgataaaaatgagagagagacaAACAGTGATAACAAACCAACTAGTGAACATGATAGACCCGAAACCCCTGACAGAAGGCACGACAGGAAAAGCAGGGAGAGAGACCGAGAAAGGGAACTGAAACGAGAAAAGGAAAGAGAACTTGAGAGATATGAAAGAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAAACGGAGGATTGAGGAGGTTGAGCGTCAGTTTGAAGCACATTTGAAGGAATGGGAGtatagagaaagagagaaagagaaagaacgTCAGTATGAAAAGGAGAAGGAGAAGGACAGGGAACGCAAAAGGAGAAAGGAAATACTTTAtgatgaagaggatgatgatggGGATTCTAGGAAGAGATGGCGTAGAAATACAATGgaggagaagagaaagaagaggcTGCGAGAAAAGGAAGATGACCTGGCTGATAGACAAAAAGAAGAGGAGGAAATTGCTGAGTCCAAGAAGAGGACTGAGGAGGATCAACAACTTAAGCGACAGAGAGATGCATTGAAGCTGTTGACTGAGCATATTGTAAATGGCAGTGACGAAACTATGGCTACCAGAGAGATTGCTAATGAAATGAAGAATGTTGTTGCTGTACAAGACACTGCAGCTGATTATAGTCATGAAGGTGATGGTAATGTACTAAATAATACCAATGATGAATCAGTCGTGGCATCTGTAGCCACAACTGATGCACAGTCAAGTGGAAATGCTCCTATGAAGAAGTTGGGATTTGGTCTGGTTGGCTCTGGAAAAAGAACAACTGTCCCTTCTGTTTTCCATGAGGATGAAGACGACGAAGCACACAAGGATAAAAAATTGAGGCCTTTGGTTCCAATTGATTACTCAACAGAGGAATTGCAGGCTGTTGAACCTGCTGCTTCTGGGCCAACACCACCCAATTTGGCTGCAGCTGCAGAGTTTGCAAAGCGTATATCTAATTCCAATTTCAAGGAAGACCGGATGGATGGAGAACGGGATAGAAGTAGGCATTCAGATGAGAAGTCTAACCACCGGGACAGGGATAGGAGTGAAGACGGCAGTCATCACAGAGATGAACACAGGGATAAAAATTCTGAACGTGACAGGGATCGAGATCATGGGTCAGATAAACACAAGACTCATGATAACAGGCGGCTTTTGGatgaaaaagcaaaaaagttAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGACAAGCATCAATTACATGACAGAATGAGACCATGGATTTCAAagaaaatccaagattttttagGGGAAGAAGAAAATACATTGATAGACTATATTGTTTCAAGTACACAAGAACATGTGAAAGCATCTCAAATGCTAGAGCGTCTTCAGATCATTTTAGATGACGAGGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACGGGGCTTGCTGTGAGGTCCAAATCATGA 2319 0.411 MVRPVYPPRLPGAINVLPVSRPPVAGIPPLRPIIPPVVRPVVPPSVTPAEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFETAEGVLRALRLLTKLNIDGQELMINVDEAMRNYLERYVQKKTEDSKEKETQATEVEKDDKVAKPSDANDDARPDLEHSNKEEGNDSANKKSHDVATFGIVTDEDREVDRDALDKIKMMIEERLKTRPLPPPPPPPVGDASVDSASEHPTKTRGDSDVDTKKNEPAEDKNERETNSDNKPTSEHDRPETPDRRHDRKSRERDRERELKREKERELERYEREAERERIRKEREQKRRIEEVERQFEAHLKEWEYREREKEKERQYEKEKEKDRERKRRKEILYDEEDDDGDSRKRWRRNTMEEKRKKRLREKEDDLADRQKEEEEIAESKKRTEEDQQLKRQRDALKLLTEHIVNGSDETMATREIANEMKNVVAVQDTAADYSHEGDGNVLNNTNDESVVASVATTDAQSSGNAPMKKLGFGLVGSGKRTTVPSVFHEDEDDEAHKDKKLRPLVPIDYSTEELQAVEPAASGPTPPNLAAAAEFAKRISNSNFKEDRMDGERDRSRHSDEKSNHRDRDRSEDGSHHRDEHRDKNSERDRDRDHGSDKHKTHDNRRLLDEKAKKLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIQDFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDDEAEMFVLKMWRMLIFEIKKVETGLAVRSKS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01477 772 MobiDBLite consensus disorder prediction 221 343 - -
Tsu05g01477 772 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 771 - -
Tsu05g01477 772 MobiDBLite consensus disorder prediction 143 195 - -
Tsu05g01477 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 125 IPR000504 GO:0003723
Tsu05g01477 772 Coils Coil 296 352 - -
Tsu05g01477 772 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 771 - -
Tsu05g01477 772 MobiDBLite consensus disorder prediction 592 657 - -
Tsu05g01477 772 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Tsu05g01477 772 Gene3D - 46 166 IPR012677 -
Tsu05g01477 772 SUPERFAMILY PWI domain 693 760 IPR036483 GO:0006397
Tsu05g01477 772 SMART pwi_2 688 761 IPR002483 GO:0006397
Tsu05g01477 772 MobiDBLite consensus disorder prediction 143 192 - -
Tsu05g01477 772 SMART rrm1_1 55 128 IPR000504 GO:0003723
Tsu05g01477 772 Gene3D PWI domain 649 768 - -
Tsu05g01477 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 134 IPR000504 GO:0003723
Tsu05g01477 772 MobiDBLite consensus disorder prediction 248 343 - -
Tsu05g01477 772 MobiDBLite consensus disorder prediction 357 440 - -
Tsu05g01477 772 CDD RRM_RBM25 54 137 IPR034268 -
Tsu05g01477 772 Coils Coil 356 376 - -
Tsu05g01477 772 Pfam PWI domain 695 758 IPR002483 GO:0006397
Tsu05g01477 772 Coils Coil 141 161 - -
Tsu05g01477 772 Coils Coil 400 440 - -
Tsu05g01477 772 ProSiteProfiles PWI domain profile. 675 772 IPR002483 GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01477 K12822 - gmx:100809428 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01477 05 14142973 14149534 Tsu05g01477 05 14142973 14149534 ECH