Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01469 ATGACTACATTGATCATACCGAAGCAGGAATCGGCATCTAATTCATGTAATGCGACAAACGAGGAGGAAGTTTTCACAATTTTAAATGACAGATCCCTTTATCCTGTTGGATGGATCCATacGCACCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGGCGATGATTCCTGAGGCATTTGCCATTGTATTGGCACCAACTGATACCTCAAGGAGCTGTGGACTCTTTCGCCTAACCGAACCTGATGGAATGAATATTCTAAAAAATTGTCCGGAGAGAGGATTTCATCCACACAAAGAACCAGATAATGGCAACCCTGTGTATGAGCACTGCTCCAATGTGTACAAAAACTCCAATCTAAGGTTTGAAATCTTTGATTTACGCTAA 411 0.4161 MTTLIIPKQESASNSCNATNEEEVFTILNDRSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSRSCGLFRLTEPDGMNILKNCPERGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01469 136 PANTHER FI19924P1 2 136 - -
Tsu05g01469 136 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 66 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu05g01469 136 SUPERFAMILY JAB1/MPN domain 16 90 - -
Tsu05g01469 136 PANTHER AMSH-LIKE PROTEASE 2 136 - -
Tsu05g01469 136 ProSiteProfiles MPN domain profile. 1 92 IPR037518 -
Tsu05g01469 136 Gene3D Cytidine Deaminase, domain 2 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01469 Tsu-Chr5 13963122 13967280 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01469 K11866 - gmx:100807282 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01469 05 13963122 13967280 Tsu05g01469 05 13963122 13967280 ECH